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View Structure Prediction Details

Protein: gi|115460400, gi...
Organism: Oryza sativa Japonica Group
Length: 572 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115460400, gi....

Description E-value Query
Range
Subject
Range
gi|116309732, gi... - gi|218195519|gb|EEC77946.1| hypothetical protein OsI_17297 [Oryza sativa Indica Group], gi|116309732...
787.0 [0..1] [572..1]

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Predicted Domain #1
Region A:
Residues: [1-572]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARRSSSSSS SSGAWRYLNP AYYLKRPKRL ALLFFVFVAA TFAFWDRQSL VREYESEISR  60
   61 LDDKVNQLRD QLRKAGVHLD ENPTGDKVSR EKLVEIDPIN NERREKVKEA MAHAWNSYVK 120
  121 YAWGMDELQP QSKNGVNSFG GLGATLVDSL DTLYIMGLKD EFQRARDWVA DSLSFDKDYD 180
  181 ASVFETTIRV VGGLLSAYDL SGDKVFLEKA KDITDRLLPA WDTPSGIPYN RINLAHGRAH 240
  241 NPGWTNGDSI LADSGTEQLE FIALSQRTGD PKYQQKAENV IRQLQKIYPS DGLLPIYINP 300
  301 HSGTASYSTI TFGAMGDSFY EYLLKVWVQG NKTEHVKHYR QMWETSMEGL LSLTKKTTPS 360
  361 NYYYICEKNG GSLSDKMDEL ACFAPGMLAL GASGYEETEK AEEIMNLAKE LARTCYNFYQ 420
  421 TTPTKLAGEN YFFHTGQDMN VGTSWNILRP ETVESLMYLW RLTGNKTYQD WGWDIFQAFE 480
  481 KNSRIESGYV GLRDVNTGEK DNMMQSFFLA ETLKYLYLLF SPPSVISFDE WVFNTEAHPL 540
  541 RIVPLNDNSK AHSVGIATPT VRPFGRKQGK QE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 166.0
Match: 1x9dA
Description: Crystal Structure Of Human Class I alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
mannosyl-oligosaccharide mannosidase activity 7.089685350864 bayes_pls_golite062009
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity 6.95179264736435 bayes_pls_golite062009
mannosidase activity 5.20286438265852 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 4.31319275372149 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 3.65589746311782 bayes_pls_golite062009
hydrolase activity 2.67964748309919 bayes_pls_golite062009
binding 1.49199031708525 bayes_pls_golite062009
catalytic activity 1.31873306707813 bayes_pls_golite062009
cation binding 0.362242764130218 bayes_pls_golite062009
metal ion binding 0.362242764130218 bayes_pls_golite062009
protein binding 0.36081692928767 bayes_pls_golite062009
ion binding 0.355220167272296 bayes_pls_golite062009
calcium ion binding 0.121126738064555 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle