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View Structure Prediction Details

Protein: gi|50928147, gi|...
Organism: Oryza sativa Japonica Group
Length: 1104 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|50928147, gi|....

Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPPPRLLFL LVMLLVVAAP GAPVFGANAP PEVKAEIDAL LMFRSGLRDP YAAMSGWNAS  60
   61 SPSAPCSWRG VACAAGTGRV VELALP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [87-771]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLRLSGAISP ALSSLTFDVS GNLLSGPVPV SFPPSLKYLE LSSNAFSGTI PANVSASATS  60
   61 LQFLNLAVNR LRGTVPASLG TLQDLHYLWL DGNLLEGTIP SALSNCSALL HLSLQGNALR 120
  121 GILPPAVAAI PSLQILSVSR NRLTGAIPAA AFGGVGNSSL RIVQVGGNAF SQVDVPVSLG 180
  181 KDLQVVDLRA NKLAGPFPSW LAGAGGLTVL DLSGNAFTGE VPPAVGQLTA LQELRLGGNA 240
  241 FTGTVPAEIG RCGALQVLDL EDNRFSGEVP AALGGLRRLR EVYLGGNSFS GQIPASLGNL 300
  301 SWLEALSTPG NRLTGDLPSE LFVLGNLTFL DLSDNKLAGE IPPSIGNLAA LQSLNLSGNS 360
  361 FSGRIPSNIG NLLNLRVLDL SGQKNLSGNL PAELFGLPQL QYVSLAGNSF SGDVPEGFSS 420
  421 LWSLRHLNLS VNSFTGSMPA TYGYLPSLQV LSASHNRICG ELPVELANCS NLTVLDLRSN 480
  481 QLTGPIPGDF ARLGELEELD LSHNQLSRKI PPEISNCSSL VTLKLDDNHL GGEIPASLSN 540
  541 LSKLQTLDLS SNNLTGSIPA SLAQIPGMLS LNVSQNELSG EIPAMLGSRF GTPSVFASNP 600
  601 NLCGPPLENE CSAYRQHRRR QRLQRLALLI GVVAATVLLL VLFCCCCVYS LLRWRRRFIE 660
  661 KRDGVKKRRR SPGRGSGSSG TSTDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.0
Match: 3cigA
Description: No description for 3cigA was found.

Predicted Domain #3
Region A:
Residues: [772-818]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSQPKLIMFN SRITYADTVE ATRQFDEENV LSRGRHGLVF KACYNDG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [819-1104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVLAILRLPS TSSDGAVVIE EGSFRKEAES LGKVKHRNLT VLRGYYAGPP PDVRLLVYDY  60
   61 MPNGNLATLL QEASHQDGHI LNWPMRHLIA LGVSRGLAFL HQSGVVHGDV KPQNILFDAD 120
  121 FEPHLSDFGL EPMVVTAGAA AAAAAASTSA TTTVGSLGYV APDAAAAGQA TREGDVYSFG 180
  181 IVLLELLTGR RPGMFAGEDE DIVKWVKRQL QRGAVAELLE PGLLELDPES SEWEEFLLGI 240
  241 KVGLLCTAPD PLDRPAMGDV VFMLEGCRVG PDIPSSADPT SQPSPA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.045757
Match: 2qkwB
Description: No description for 2qkwB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle