YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|115459218, gi...
Organism:	Oryza sativa Japonica Group
Length:	628 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115459218, gi....

Description	E-value	Query Range	Subject Range
gi\|116310720 - gi\|116310720\|emb\|CAH67517.1\| OSIGBa0092E01.12 [Oryza sativa (indica cultivar-group)]	797.0	[0..9]	[628..11]
gi\|110742615, gi... - gi\|8777473\|dbj\|BAA97053.1\| unnamed protein product [Arabidopsis thaliana], gi\|15231947\|ref\|NP_188108...	560.0	[0..113]	[627..82]
gi\|109119581 - gi\|109119581\|ref\|XP_001115462.1\| PREDICTED: hypothetical protein [Macaca mulatta]	156.0	[0..10]	[107..133]
gi\|56911104, gi\|... - gi\|56964861\|ref\|YP_176592.1\| beta-N-acetylglucosaminidase [Bacillus clausii KSM-K16], gi\|56911104\|db...	114.0	[0..343]	[617..942]
gi\|108869006, gi... - gi\|157105469\|ref\|XP_001648882.1\| hypothetical protein AaeL_AAEL014506 [Aedes aegypti], gi\|108869006\|...	114.0	[0..399]	[628..4405]
gi\|89301033, gi\|... - gi\|89301033\|gb\|EAR99021.1\| hypothetical protein TTHERM_00384650 [Tetrahymena thermophila SB210], gi\|... 24757; - /numExons=16 /strand=+ /begin=2490 /end=11314 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coordsys...	110.0	[0..342]	[627..1880]
gi\|49529160 - gi\|49529160\|emb\|CAG62826.1\| unnamed protein product [Candida glabrata] gi\|50294870, gi\|... - gi\|50294870\|ref\|XP_449846.1\| hypothetical protein CAGL0M11616g [Candida glabrata CBS138], gi\|4952916...	108.0	[0..412]	[628..4120]
gi\|23612220, gi\|... - gi\|86170993\|ref\|XP_966126.1\| myosin-like protein [Plasmodium falciparum 3D7], gi\|46361091\|emb\|CAG253...	106.0	[0..334]	[627..1170]
SPCC737.08 - midasin MDN1_SCHPO - Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdn1 PE=1 SV=1	104.0	[0..337]	[620..3921]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASASGSATL LYPKTPQSPR LLRRNPHYSG LRLVHPLLLA TVSPPPPAAL RRRRNSTTIH  60
   61 ASSSSAAAGA AAASFPASST PPPRPPRTDP PEEHPTVARA GRSKKHR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPSGGRIEGG GDVRREAKSR ARIRSRRLGE NAFYRRKRRA AKENQADAFT DAELEMIGLG  60
   61 YDRSVRFMDG PDDPRLRHRH DWYRFGRYGP YSWRGIVVGP PIRGRFSDDR VSLMSEVSDH 120
  121 DEWDRVEQFD MSNQFSNRLN ELDAAVGFRY YWVFVRHPRW RPDELPWEQW TLSAEVAIQA 180
  181 SEEQRLDKWN LMGRLGNPTR ELITRCAAWT RPDIIYVKRP LYQSRFEPQK NFYSQLRPLV 240
  241 DPVTEN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [354-551]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFLFDLEHDG QVIRTTYFGG LCRIVKASPK AYVDDVVNAY SKLSDVDKNR CLEFLLTNHP  60
   61 MELLHPYTKE WKVKLEEMEL GCDAPDDNES DDEGGDESGT EVVDWVEDDG FDEGGDTDDD 120
  121 EEPGYDDDEV IDVREEVETE EVESDDESEK YWDEQWKQAM KSSDKMEKLV KTSIEASNEY 180
  181 NRRRMQQEKE MELRMARA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [552-628]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTMVMKQEQT EDEDEQQEQI EDEDEQQESP RGRSAKDKRK SKAPGHFLRA AVRPFTYRNL  60
   61 VKEIVLMRHF IVDGEID

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits