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View Structure Prediction Details

Protein: gi|38345452, gi|...
Organism: Oryza sativa Japonica Group
Length: 518 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38345452, gi|....

Description E-value Query
Range
Subject
Range
gi|116309320 - gi|116309320|emb|CAH66406.1| OSIGBa0093L02.2 [Oryza sativa (indica cultivar-group)]
411.0 [0..1] [518..1]

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Predicted Domain #1
Region A:
Residues: [1-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEERMEPPP PPPYIHIETN DFLHRRHKRQ KEEDIAVCEC QYNLLDPDSA CGDRCLNVLT  60
   61 STECTPGYCL CGVYCKNQRF QKSQYAATRL VKTEGRGWGL LADENIMAGQ FVMEYCGEVI 120
  121 SWKEAKRRSQ AYENQGLTDA YIIYLNADES IDATKKGSLA RFINHSCQPN CETRKWNVLG 180
  181 EVRVGIFAKQ DIPIGTELSY DYNFEWFGGA MVRCLCGAGS CSGFL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.0
Match: 2o8jA
Description: No description for 2o8jA was found.

Predicted Domain #2
Region A:
Residues: [226-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAKSRGFQEA TYLWEDDDDR FSVENVPLYD SADDEPTSIP KDILIKDEPN TQDGNNNTIQ  60
   61 NTGIPIIASS SEFTPMNVEP SIASSNEFTP MNV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [319-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPLNVSSNEL TPMTIEPLNA IPMGVDFTQN GSIEYGAQCA EDALQNSTRG VANLQNQSAP  60
   61 RDNNHTELVA VKRRPTLRGG KAKRGMRKQL NVVGICDRLA SEVAREEILY CEEMKNEAAA 120
  121 EIDSLYDEIR PAIEEHERDS QDSVATSLAE KWIEASCCKY KADFDLYASI IKNLASTPLR 180
  181 SKEDAAPTEQ NGLMYLENGP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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