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View Structure Prediction Details

Protein: gi|50923907, gi|...
Organism: Oryza sativa Japonica Group
Length: 276 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50923907, gi|....

Description E-value Query
Range
Subject
Range
gi|116309384, gi... - gi|116309384|emb|CAH66463.1| H0718E12.7 [Oryza sativa (indica cultivar-group)], gi|116309383|emb|CAH...
255.0 [0..8] [276..40]

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Predicted Domain #1
Region A:
Residues: [1-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLAREPA EESKDETVDK ELLMKLKTSQ STDPFVRKFK TEKKEMRTQV AFGQGNSSYA  60
   61 RSFPMQSSAD GSASKLPKEY VEPWDYTHSD YPVTLPLRRP YSGDPEILNE EEFGESSATG 120
  121 AQDGELTTAE ELGLMHRSDK AQLLFFQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [148-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPASLPLPKQ PDSVAETDKG DGVDAEPTST SSKEMHAGTR PPKVLGSKLK DLPEGFMGKI  60
   61 LVYRSGKVKM KIGDSLFDVS PGSNCMFVQE VAAINAREKH CCTLGEISKR AIVTPDIEHL 120
  121 LDSFDKMEA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 32.958607
Match: PF05132.5
Description: No description for PF05132.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle