YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33600967, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33600967, gi|....

Description	E-value	Query Range	Subject Range
gi\|3916255 - gi\|3916255\|gb\|AAC78852.1\| ExbD [Bordetella bronchiseptica]	162.0	[0..1]	[145..1]
gi\|115423197, gi... - gi\|187478611\|ref\|YP_786635.1\| biopolymer transport protein [Bordetella avium 197N], gi\|115423197\|emb...	162.0	[0..1]	[144..1]
gi\|33566574 - gi\|33566574\|emb\|CAE37831.1\| biopolymer transport protein ExbD/TolR [Bordetella parapertussis] gi\|33597123 - gi\|33597123\|ref\|NP_884766.1\| biopolymer transport protein ExbD/TolR [Bordetella parapertussis 12822]	161.0	[0..1]	[145..1]
gi\|30138255, gi\|... - gi\|30248369\|ref\|NP_840439.1\| biopolymer transport protein ExbD/TolR [Nitrosomonas europaea ATCC 1971...	160.0	[0..1]	[143..1]
gi\|83592428, gi\|... - gi\|83592428\|ref\|YP_426180.1\| biopolymer transport protein ExbD/TolR [Rhodospirillum rubrum ATCC 1117... gi\|48765099 - ref\|ZP_00269650.1\| COG0848: Biopolymer transport protein [Rhodospirillum rubrum]	160.0	[0..5]	[141..8]
gi\|170733561, gi... - gi\|170733561\|ref\|YP_001765508.1\| biopolymer transport protein ExbD/TolR [Burkholderia cenocepacia MC... gi\|84355174, gi\|... - gi\|84355174\|ref\|ZP_00980063.1\| COG0848: Biopolymer transport protein [Burkholderia cenocepacia PC184... gi\|206560653, gi... - gi\|206560653\|ref\|YP_002231418.1\| putative biopolymer transport protein [Burkholderia cenocepacia J23...	159.0	[0..1]	[142..1]
gi\|23015567 - gi\|23015567\|ref\|ZP_00055339.1\| COG0848: Biopolymer transport protein [Magnetospirillum magnetotactic...	159.0	[0..2]	[155..4]
gi\|37222146 - gi\|37222146\|gb\|AAP49339.1\| ExbD [uncultured bacterium]	158.0	[0..1]	[138..1]
gi\|82947153, gi\|... - gi\|83312312\|ref\|YP_422576.1\| biopolymer transport protein [Magnetospirillum magneticum AMB-1], gi\|82...	157.0	[0..1]	[136..1]
gi\|84362309, gi\|... - gi\|84362309\|ref\|ZP_00986937.1\| COG0848: Biopolymer transport protein [Burkholderia dolosa AUO158], g...	157.0	[0..1]	[142..1]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFGSFDNKG SGSHTVSEIN MVPLIDVMLV LLVIFIITAP LLAHSIRINI PQVSAEQIEE  60
   61 EPKTIDLAID ANGALFWDEK PVSIDDLPNR FKAIAGDKPQ AEIRIRADQA TRYETLAQVM 120
  121 ASARRSGMTR IGFITSPAPQ GAPGEAGASA APAAP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.49485
Match:	PF02472.7
Description:	No description for PF02472.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.841	N/A	N/A	c.23.5	Flavoproteins
View	Download	0.841	N/A	N/A	c.46.1	Rhodanese/Cell cycle control phosphatase
View	Download	0.829	N/A	N/A	c.23.6	Cobalamin (vitamin B12)-binding domain
View	Download	0.818	N/A	N/A	c.36.1	Thiamin diphosphate-binding fold (THDP-binding)
View	Download	0.810	N/A	N/A	c.23.5	Flavoproteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits