YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33565846
Organism:	Bordetella parapertussis
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33565846.

Description	E-value	Query Range	Subject Range
gi\|25331182 - pir\|\|AD3489 cytochrome o ubiquinol oxidase operon protein cyod [imported] - Brucella melitensis (str... gi\|17983942, gi\|... - gi\|17988181\|ref\|NP_540815.1\| cytochrome O ubiquinol oxidase operon protein CYOD [Brucella melitensis...	151.0	[0..1]	[135..13]
gi\|114536608, gi... - gi\|114707979\|ref\|ZP_01440871.1\| Prokaryotic Cytochrome C oxidase subunit IV [Fulvimarina pelagi HTCC...	146.0	[0..10]	[133..9]
gi\|1773113 - gi\|1773113\|gb\|AAB40185.1\| cytochrome o ubiquinol oxidase C subunit [Escherichia coli]	142.0	[0..1]	[124..13]
gi\|115511813, gi... - gi\|117622689\|ref\|YP_851602.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli APEC O1], ...	141.0	[0..1]	[124..13]
gi\|25331170 - pir\|\|F87468 ubiquinol oxidase subunit IV [imported] - Caulobacter crescentus gi\|221234785, gi... - gi\|221234785\|ref\|YP_002517221.1\| quinol cytochrome oxidase polypeptide IV [Caulobacter crescentus NA... gi\|13423196, gi\|... - gi\|16126014\|ref\|NP_420578.1\| ubiquinol oxidase subunit IV [Caulobacter crescentus CB15], gi\|13423196...	135.0	[0..14]	[135..8]
gi\|47575650 - gi\|47575650\|ref\|ZP_00245685.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Rubri... gi\|124266931, gi... - gi\|124266931\|ref\|YP_001020935.1\| cytochrome ubiquinol oxidase subunit IV [Methylibium petroleiphilum...	135.0	[0..9]	[135..1]
gi\|163842321, gi... - gi\|163842321\|ref\|YP_001626725.1\| cytochrome o ubiquinol oxidase subunit IV [Brucella suis ATCC 23445... gi\|161618035, gi... - gi\|161618035\|ref\|YP_001591922.1\| cytochrome o ubiquinol oxidase subunit IV [Brucella canis ATCC 2336... gi\|62289032, gi\|... - gi\|62289032\|ref\|YP_220825.1\| QoxD, ubiquinol oxidase subunit IV [Brucella abortus bv. 1 str. 9-941],... gi\|82698969 - gi\|82698969\|ref\|YP_413543.1\| cytochrome C oxidase subunit IV [Brucella melitensis biovar Abortus 230... gi\|82615070 - gi\|82615070\|emb\|CAJ09998.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella melitensis biovar ... gi\|254694846 - gi\|254694846\|ref\|ZP_05156674.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella abortus bv. 3 ... gi\|254696475 - gi\|254696475\|ref\|ZP_05158303.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella abortus bv. 2 ... gi\|254709204 - gi\|254709204\|ref\|ZP_05171015.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella pinnipedialis ... gi\|254713371 - gi\|254713371\|ref\|ZP_05175182.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella ceti M644/93/1... gi\|148560321, gi... - gi\|148560321\|ref\|YP_001258092.1\| cytochrome o ubiquinol oxidase subunit IV [Brucella ovis ATCC 25840... gi\|254705226 - gi\|254705226\|ref\|ZP_05167054.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella suis bv. 3 str... gi\|254707255 - gi\|254707255\|ref\|ZP_05169083.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella pinnipedialis ... gi\|254731387 - gi\|254731387\|ref\|ZP_05189965.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella abortus bv. 4 ... gi\|254716271 - gi\|254716271\|ref\|ZP_05178082.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella ceti M13/05/1] gi\|254718265 - gi\|254718265\|ref\|ZP_05180076.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella sp. 83/13] gi\|189018879, gi... - gi\|189023307\|ref\|YP_001934075.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella abortus S19],...	131.0	[0..16]	[135..1]
gi\|113529472, gi... - gi\|116694973\|ref\|YP_729184.1\| bo3-type chinol oxidase, subunit IV [Ralstonia eutropha H16], gi\|11352...	131.0	[0..15]	[130..11]
gi\|23500960, gi\|... - gi\|23500960\|ref\|NP_697087.1\| ubiquinol oxidase subunit IV [Brucella suis 1330], gi\|23346817\|gb\|AAN29...	128.0	[0..16]	[135..1]
gi\|25331180 - pir\|\|AE2593 cytochrome o ubiquinol oxidase subunit IV cyoD [imported] - Agrobacterium tumefaciens (s... gi\|159184177, gi... - gi\|17934057\|ref\|NP_530847.1\| cytochrome o ubiquinol oxidase subunit IV [Agrobacterium tumefaciens st...	127.0	[0..27]	[135..22]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERTEHAAD LPPPHGAGHH HEDDDGPHGT LASYLTGFVL AAILTAIPFW LVMDGVFASS  60
   61 RTTALVILAF AVVQIVVHLV YFLHMDAKSE SGWNMLALIF TLVLVVITLS GSIWIMYHLN 120
  121 SNMMPMSVHD VRNMP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.638272
Match:	PF03626.5
Description:	No description for PF03626.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits