YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33596644
Organism:	Bordetella parapertussis 12822
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33596644.

Description	E-value	Query Range	Subject Range
gi\|83748486, gi\|... - gi\|83748486\|ref\|ZP_00945508.1\| IscU protein [Ralstonia solanacearum UW551], gi\|83724897\|gb\|EAP72053.... gi\|206595032, gi... - gi\|207743633\|ref\|YP_002260025.1\| iron-binding protein [Ralstonia solanacearum IPO1609], gi\|206595032... gi\|207725258, gi... - gi\|207725258\|ref\|YP_002255654.1\| iron-binding protein [Ralstonia solanacearum MolK2], gi\|206590492\|e...	202.0	[0..1]	[133..1]
gi\|77967645, gi\|... - gi\|78066900\|ref\|YP_369669.1\| scaffold protein [Burkholderia sp. 383], gi\|77967645\|gb\|ABB09025.1\| FeS...	202.0	[0..1]	[135..1]
gi\|115282201, gi... - gi\|74017759\|ref\|ZP_00688382.1\| FeS cluster assembly scaffold IscU [Burkholderia ambifaria AMMD], gi\|... gi\|118699455, gi... - gi\|172061080\|ref\|YP_001808732.1\| scaffold protein [Burkholderia ambifaria MC40-6], gi\|171993597\|gb\|A...	201.0	[0..1]	[135..1]
gi\|17428033 - gi\|17428033\|emb\|CAD14722.1\| probable iron-binding protein [Ralstonia solanacearum GMI1000] gi\|17545739 - gi\|17545739\|ref\|NP_519141.1\| scaffold protein [Ralstonia solanacearum GMI1000]	201.0	[0..1]	[133..1]
gi\|72118174, gi\|... - gi\|73540761\|ref\|YP_295281.1\| scaffold protein [Ralstonia eutropha JMP134], gi\|72118174\|gb\|AAZ60437.1...	200.0	[0..1]	[133..1]
gi\|85773532, gi\|... - gi\|86157021\|ref\|YP_463806.1\| scaffold protein [Anaeromyxobacter dehalogenans 2CP-C], gi\|85773532\|gb\|...	200.0	[0..1]	[129..1]
gi\|68530174, gi\|... - gi\|94309971\|ref\|YP_583181.1\| scaffold protein [Ralstonia metallidurans CH34], gi\|93353823\|gb\|ABF0791...	200.0	[0..1]	[133..1]
gi\|115422597, gi... - gi\|187478011\|ref\|YP_786035.1\| [Fe-S] cluster formation/repair protein [Bordetella avium 197N], gi\|11...	200.0	[0..1]	[136..1]
gi\|105897859, gi... - gi\|67657030\|ref\|ZP_00454410.1\| FeS cluster assembly scaffold IscU [Burkholderia cenocepacia AU 1054]... gi\|254247784, gi... - gi\|84355088\|ref\|ZP_00979978.1\| COG0822: NifU homolog involved in Fe-S cluster formation [Burkholderi... gi\|67667399, gi\|... - gi\|67667399\|ref\|ZP_00464623.1\| FeS cluster assembly scaffold IscU [Burkholderia cenocepacia HI2424],... gi\|170733478, gi... - gi\|170733478\|ref\|YP_001765425.1\| scaffold protein [Burkholderia cenocepacia MC0-3], gi\|169816720\|gb\|...	199.0	[0..1]	[135..1]
gi\|134296306, gi... - gi\|67545527\|ref\|ZP_00423448.1\| FeS cluster assembly scaffold IscU [Burkholderia vietnamiensis G4], g...	199.0	[0..1]	[135..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYSSKVLDH YENPRNVGSF DKGDDSVGTG MVGAPACGDV MKLQIKVNEA GVIEDARFKT  60
   61 YGCGSAIASS SLVTEWVKGK TLDEAMNIRN TQIAEELALP PVKIHCSILA EDAIKAAVQD 120
  121 YKTKHGAETP EAVAAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	1q48A
Description:	Solution NMR Structure of The Haemophilus Influenzae Iron-Sulfur Cluster Assembly Protein U (IscU) with Zinc Bound at the Active Site. Northeast Structural Genomics Consortium Target IR24. This protein is not apo, it is a model without zinc binding constr
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.626732820625785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: