YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33602017, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33602017, gi|....

Description	E-value	Query Range	Subject Range
gi\|85698762, gi\|... - gi\|85714315\|ref\|ZP_01045303.1\| potassium efflux system protein [Nitrobacter sp. Nb-311A], gi\|8569876...	88.0	[0..2]	[93..1]
gi\|75676842, gi\|... - gi\|75676842\|ref\|YP_319263.1\| putative monovalent cation/H+ antiporter subunit F [Nitrobacter winogra...	87.0	[0..2]	[93..1]
gi\|91799480, gi\|... - gi\|92116586\|ref\|YP_576315.1\| putative monovalent cation/H+ antiporter subunit F [Nitrobacter hamburg...	87.0	[0..2]	[93..1]
gi\|192285257, gi... - gi\|192291508\|ref\|YP_001992113.1\| multiple resistance and pH regulation protein F [Rhodopseudomonas p... phaF - phaF pH adaptation potassium efflux system phaF 3168523:3168804 forward MW:10011	86.0	[0..1]	[93..1]
gi\|83368991, gi\|... - gi\|83368991\|ref\|ZP_00913850.1\| multicomponent K+:H+ antiporter subunit F [Rhodobacter sphaeroides AT...	86.0	[0..1]	[93..1]
gi\|84712334, gi\|... - gi\|84712334\|ref\|ZP_01020246.1\| protein F of Na+/H+ antiporter of putative pH adaptation potassium ef...	86.0	[0..2]	[93..1]
gi\|56311763, gi\|... - gi\|56475720\|ref\|YP_157309.1\| putative monovalent cation/H+ antiporter subunit F [Aromatoleum aromati...	85.0	[0..2]	[94..1]
gi\|30249857, gi\|... - gi\|30249857\|ref\|NP_841927.1\| putative monovalent cation/H+ antiporter subunit F [Nitrosomonas europa...	85.0	[0..1]	[93..1]
gi\|62425543 - gi\|62425543\|ref\|ZP_00380676.1\| COG2212: Multisubunit Na+/H+ antiporter, MnhF subunit [Brevibacterium...	85.0	[0..1]	[94..1]
gi\|187478490, gi... - gi\|187478490\|ref\|YP_786514.1\| K(+)/H(+) antiporter subunit F (pH adaptation potassium efflux system ...	85.0	[0..2]	[94..1]

Back

Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNIVLYWSA SFALLCFALA MACAAIRLLR GPTAQDRVLA LDSLYVSGML TMLVFGIRAG  60
   61 TPVYFDIALL IALFGFVGST AMAKFLLRGE VIEP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.677781
Match:	PF04066.4
Description:	No description for PF04066.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits