YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33572172, gi\|...
Organism:	Bordetella pertussis Tohama I
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33572172, gi|....

Description	E-value	Query Range	Subject Range
gi\|33573186 - gi\|33573186\|emb\|CAE36838.1\| putative outer membrane protein [Bordetella parapertussis] gi\|33596183 - gi\|33596183\|ref\|NP_883826.1\| putative outer membrane protein [Bordetella parapertussis 12822]	159.0	[0..1]	[187..17]
gi\|115422823, gi... - gi\|187478237\|ref\|YP_786261.1\| outer membrane protein [Bordetella avium 197N], gi\|115422823\|emb\|CAJ49...	138.0	[0..1]	[187..1]
gi\|21960048, gi\|... - gi\|22127002\|ref\|NP_670425.1\| periplasmic chaperone [Yersinia pestis KIM], gi\|21960048\|gb\|AAM86676.1\|... gi\|45437430, gi\|... - gi\|45442565\|ref\|NP_994104.1\| periplasmic chaperone [Yersinia pestis biovar Microtus str. 91001], gi\|...	125.0	[0..12]	[186..19]
gi\|77633947 - gi\|77633947\|ref\|ZP_00796059.1\| COG2825: Outer membrane protein [Yersinia pestis Angola] gi\|117672747, gi... - gi\|77630028\|ref\|ZP_00792614.1\| COG2825: Outer membrane protein [Yersinia pseudotuberculosis IP 31758... gi\|89105143 - gi\|89105143\|ref\|ZP_01177668.1\| COG2825: Outer membrane protein [Yersinia pestis biovar Orientalis st...	125.0	[0..12]	[186..18]
gi\|77963166 - gi\|77963166\|ref\|ZP_00826978.1\| COG2825: Outer membrane protein [Yersinia mollaretii ATCC 43969]	123.0	[0..12]	[186..5]
gi\|77977739 - gi\|77977739\|ref\|ZP_00833180.1\| COG2825: Outer membrane protein [Yersinia intermedia ATCC 29909]	121.0	[0..12]	[186..5]
gi\|77957698 - gi\|77957698\|ref\|ZP_00821747.1\| COG2825: Outer membrane protein [Yersinia bercovieri ATCC 43970]	121.0	[0..12]	[186..5]
gi\|238787226, gi... - gi\|77972719\|ref\|ZP_00828278.1\| COG2825: Outer membrane protein [Yersinia frederiksenii ATCC 33641], ...	120.0	[0..12]	[186..1]
gi\|91688064, gi\|... - gi\|91784110\|ref\|YP_559316.1\| Outer membrane protein (OmpH-like) [Burkholderia xenovorans LB400], gi\|...	119.0	[0..17]	[185..1]
gi\|108778439, gi... - gi\|108806526\|ref\|YP_650442.1\| periplasmic chaperone [Yersinia pestis Antiqua], gi\|108778439\|gb\|ABG12... gi\|108776755, gi... - gi\|108813107\|ref\|YP_648874.1\| periplasmic chaperone [Yersinia pestis Nepal516], gi\|108776755\|gb\|ABG1... gi\|51590591, gi\|... - gi\|51597309\|ref\|YP_071500.1\| periplasmic chaperone [Yersinia pseudotuberculosis IP 32953], gi\|515905... gi\|145598941, gi... - gi\|145598941\|ref\|YP_001163017.1\| periplasmic chaperone [Yersinia pestis Pestoides F], gi\|145210637\|g...	119.0	[0..12]	[186..5]

Back

Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSDFALNTS GSKRAKRGAG KLGVSLALAG ALLFGSSAAV TAQAQGTKIG FVNTERILRE  60
   61 SGPAKAAQSK IESEFKRRDD ELQRLSSSLR SQAEKFDKDA PVLSESDRVK RQRELSNLDM 120
  121 DLQRKRREFQ EDFNRRRNEE FSSIVTKAND AIKRIAEQEN YDLIIQDAVT VNPRIDITDK 180
  181 VIQSLGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.30103
Match:	1sg2A
Description:	Crystal structure of the periplasmic chaperone Skp
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits