YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33577031, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33577031, gi|....

Description	E-value	Query Range	Subject Range
gi\|34495800, gi\|... - gi\|34495800\|ref\|NP_900015.1\| bacteriophage base plate protein [Chromobacterium violaceum ATCC 12472]...	196.0	[0..1]	[209..1]
gi\|15676991, gi\|... - gi\|7226349\|gb\|AAF41502.1\| putative baseplate assembly protein V [Neisseria meningitidis MC58], gi\|15... gi\|15794248, gi\|... - gi\|7379995\|emb\|CAB84572.1\| hypothetical protein NMA1321 [Neisseria meningitidis Z2491], gi\|218768173... gi\|11352925 - pir\|\|D81122 baseplate assembly protein V, probable NMB1111 [imported] - Neisseria meningitidis (stra...	192.0	[0..7]	[209..12]
gi\|32029875, gi\|... - gi\|32029875\|ref\|ZP_00132829.1\| COG4384: Mu-like prophage protein gp45 [Haemophilus somnus 2336], gi\|...	188.0	[0..3]	[209..6]
gi\|75226657 - gi\|75226657\|ref\|ZP_00713650.1\| COG4540: Phage P2 baseplate assembly protein gpV [Escherichia coli B7...	181.0	[0..2]	[210..3]
gi\|30065718, gi\|... - gi\|30065718\|ref\|NP_839863.1\| gpV [Yersinia phage L-413C], gi\|30025912\|gb\|AAP04451.1\| gpV [Bacterioph...	181.0	[0..2]	[210..1]
SPIKE_BPP2 - Spike protein OS=Enterobacteria phage P2 GN=V PE=1 SV=2	179.0	[0..2]	[210..1]
gi\|188489979, gi... - gi\|75513913\|ref\|ZP_00736266.1\| COG4540: Phage P2 baseplate assembly protein gpV [Escherichia coli 53...	178.0	[0..2]	[210..1]
gi\|77957286 - gi\|77957286\|ref\|ZP_00821346.1\| COG4384: Mu-like prophage protein gp45 [Yersinia bercovieri ATCC 4397...	175.0	[0..1]	[205..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFREIDKRIG RALGQIRQAF RAVIARVNSS PSVQLLSGQG VAGEQLRDNE LFQHYGFTSC  60
   61 PPSGTMAIAL PLGGKTSHGV IIATEHATYR LV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.08
Match:	2p5zX
Description:	No description for 2p5zX was found.

Predicted Domain #2

Region A:
Residues: [93-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLQEGELAIY TDEGTKLVMK RGRVIETDCD EYRLTCKTFT VNATESSTFT TPTLTASDKA  60
   61 VINGLVTGKG GLALSGGEGG VAAQIEGGLR ATGDIRSGNV SLDDHDHNET GAVTGKPNPI 120
  121 G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits