YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33576887, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33576887, gi|....

Description	E-value	Query Range	Subject Range
gi\|33574096 - gi\|33574096\|emb\|CAE38421.1\| 3-demethylubiquinone-9 3-methyltransferase [Bordetella parapertussis] gi\|33597668 - gi\|33597668\|ref\|NP_885311.1\| 3-demethylubiquinone-9 3-methyltransferase [Bordetella parapertussis 12...	205.0	[0..1]	[257..1]
UBIG_BORBR - 3-demethylubiquinone-9 3-methyltransferase OS=Bordetella bronchiseptica GN=ubiG PE=3 SV=2 UBIG_BORBR - Ubiquinone biosynthesis O-methyltransferase OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC...	194.0	[0..17]	[257..1]
UBIG_BORPE - Ubiquinone biosynthesis O-methyltransferase OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 ... UBIG_BORPE - 3-demethylubiquinone-9 3-methyltransferase OS=Bordetella pertussis GN=ubiG PE=3 SV=1	191.0	[0..17]	[257..1]
UBIG_BORA1 - Ubiquinone biosynthesis O-methyltransferase OS=Bordetella avium (strain 197N) GN=ubiG PE=3 SV=1	191.0	[0..17]	[257..1]
gi\|45520389, gi\|... - gi\|91775929\|ref\|YP_545685.1\| 3-demethylubiquinone-9 3-methyltransferase [Methylobacillus flagellatus...	189.0	[0..29]	[257..2]
UBIG_BORPA - 3-demethylubiquinone-9 3-methyltransferase OS=Bordetella parapertussis GN=ubiG PE=3 SV=2 UBIG_BORPA - Ubiquinone biosynthesis O-methyltransferase OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587...	188.0	[0..17]	[257..1]
UBIG_VIBPA - 3-demethylubiquinone-9 3-methyltransferase OS=Vibrio parahaemolyticus GN=ubiG PE=3 SV=1 UBIG_VIBPA - Ubiquinone biosynthesis O-methyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2...	188.0	[0..25]	[257..2]
gi\|46141539, gi\|... - gi\|71064702\|ref\|YP_263429.1\| 3-demethylubiquinone-9 3-methyltransferase [Psychrobacter arcticus 273-...	187.0	[0..1]	[257..1]
UBIG_PSEAB - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ubiG PE... gi\|107102701 - gi\|107102701\|ref\|ZP_01366619.1\| hypothetical protein PaerPA_01003767 [Pseudomonas aeruginosa PACS2] gi\|126195237, gi... - gi\|84326079\|ref\|ZP_00974109.1\| COG2227: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol met... gi\|84319998, gi\|... - gi\|84319998\|ref\|ZP_00968384.1\| COG2227: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol met...	186.0	[0..28]	[257..2]
gi\|91227186, gi\|... - gi\|91227186\|ref\|ZP_01261645.1\| 3-demethylubiquinone-9 3-methyltransferase [Vibrio alginolyticus 12G0...	186.0	[0..25]	[257..2]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYPYIEPVG PPTPAPMTTA TQSSAPGVNV DQAEVEKFSA LAARWWDPES EFKPLHAINP  60
   61 LRLGWIQETA GSLSGKRVLD VGCGGGILSE SMAVAGAQVT GIDLAEKSLK IARLHGLESG 120
  121 VKVDYRAVPV EELATEQPGQ YDVVTCMEML EHVPDPASVV RACAALAKPG GWVFFSTLNR 180
  181 NPKSFLFAIV GAEYVLRLLP RGTHSYDSFI KPSELAASAR QAGLEPTGMR GMEYNPITQV 240
  241 YSLSANTSVN YLMSTRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.154902
Match:	2fk7A
Description:	Crystal structure of Hma (MmaA4) from Mycobacterium tuberculosis, apo-form
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	1.07321114919891	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.612108481676679	bayes_pls_golite062009
methyltransferase activity	0.606225212585352	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.14147363365106	bayes_pls_golite062009
binding	0.109975487409217	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: