YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33574079
Organism:	Bordetella parapertussis
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33574079.

Description	E-value	Query Range	Subject Range
gi\|114328758, gi... - gi\|114328758\|ref\|YP_745915.1\| electron transfer flavoprotein beta-subunit [Granulibacter bethesdensi...	312.0	[0..15]	[266..32]
gi\|49089300, gi\|... - gi\|67523567\|ref\|XP_659843.1\| hypothetical protein AN2239.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	307.0	[0..5]	[261..637]
gi\|120594001, gi... - gi\|84713181\|ref\|ZP_01020967.1\| electron transfer flavoprotein beta-subunit [Polaromonas naphthaleniv...	305.0	[0..18]	[266..1]
gi\|33603732, gi\|... - gi\|33603732\|ref\|NP_891292.1\| electron transfer flavoprotein beta-subunit [Bordetella bronchiseptica ...	304.0	[0..18]	[266..1]
gi\|67776713, gi\|... - gi\|91789003\|ref\|YP_549955.1\| electron transfer flavoprotein beta-subunit [Polaromonas sp. JS666], gi...	303.0	[0..18]	[266..1]
gi\|33592118, gi\|... - gi\|33592118\|ref\|NP_879762.1\| electron transfer flavoprotein beta-subunit [Bordetella pertussis Toham...	303.0	[0..18]	[266..1]
gi\|114704363, gi... - gi\|114704363\|ref\|ZP_01437271.1\| electron transfer flavoprotein, beta subunit [Fulvimarina pelagi HTC...	302.0	[0..18]	[266..1]
gi\|90420253, gi\|... - gi\|90420253\|ref\|ZP_01228161.1\| electron transfer flavoprotein beta-subunit [Aurantimonas sp. SI85-9A... gi\|90420253, gi\|... - gi\|90420253\|ref\|ZP_01228161.1\| electron transfer flavoprotein beta-subunit [Aurantimonas sp. SI85-9A...	301.0	[0..18]	[266..1]
gi\|114341375, gi... - gi\|114570913\|ref\|YP_757593.1\| electron transfer flavoprotein beta-subunit [Maricaulis maris MCS10], ...	301.0	[0..18]	[266..1]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSRVSPGNY CYFGDCWMKV LVPVKRVVDY NVKVRVKSDQ TGVDIANVKM SMNPFDEIAV  60
   61 EEATRLKEKG AVAEVVAVSC GAAQCQETLR TAMAIGADRA VLVQTDAELQ PLAVAKLLKA 120
  121 LVDKEQPQLV ILGKQAIDDD ANQTGQMLAA LLDWPQATFA SKVELGDGQV TVTREVDGGL 180
  181 ETLSLNLPAI VTTDLRLNEP RYVTLPNIMK AKKKPLETVS PQDLGVDPAP RLKTLKVSEP 240
  241 PARQAGIKVP DVATLVDKLK NEAKVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.522879
Match:	1efvB
Description:	Small, beta subunit of electron transfer flavoprotein ETFP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.91619517870463	bayes_pls_golite062009
nucleic acid binding	1.38436645708366	bayes_pls_golite062009
DNA binding	1.35936746868519	bayes_pls_golite062009
ligase activity	1.13489674466232	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.883268134837366	bayes_pls_golite062009
catalytic activity	0.828867994386867	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.724532065311415	bayes_pls_golite062009
electron carrier activity	0.40873603017227	bayes_pls_golite062009
transferase activity	0.40273889227698	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: