YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33602136, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33602136, gi|....

Description	E-value	Query Range	Subject Range
gi\|33573823 - gi\|33573823\|emb\|CAE38131.1\| putative membrane protein [Bordetella parapertussis] gi\|33597396 - gi\|33597396\|ref\|NP_885039.1\| hypothetical protein BPP2839 [Bordetella parapertussis 12822]	153.0	[0..1]	[100..1]
gi\|83749330, gi\|... - gi\|83749330\|ref\|ZP_00946327.1\| Hypothetical protein RRSL_00998 [Ralstonia solanacearum UW551], gi\|83... gi\|207742359, gi... - gi\|207742359\|ref\|YP_002258751.1\| hypothetical transmembrane protein [Ralstonia solanacearum IPO1609]... gi\|207727954, gi... - gi\|207727954\|ref\|YP_002256348.1\| hypothetical protein RSMK04239 [Ralstonia solanacearum MolK2], gi\|2...	146.0	[0..1]	[100..1]
gi\|53764608, gi\|... - gi\|75908349\|ref\|YP_322645.1\| hypothetical protein Ava_2130 [Anabaena variabilis ATCC 29413], gi\|7570...	139.0	[0..1]	[97..1]
gi\|15073697 - gi\|15073697\|emb\|CAC45339.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15964520 - gi\|15964520\|ref\|NP_384873.1\| hypothetical protein SMc00822 [Sinorhizobium meliloti 1021]	138.0	[0..1]	[97..1]
gi\|13471774, gi\|... - gi\|14022518\|dbj\|BAB49127.1\| mll1857 [Mesorhizobium loti MAFF303099], gi\|13471774\|ref\|NP_103341.1\| hy...	137.0	[0..1]	[97..1]
gi\|70732501, gi\|... - gi\|70732501\|ref\|YP_262264.1\| hypothetical protein PFL_5187 [Pseudomonas fluorescens Pf-5], gi\|683468...	136.0	[0..1]	[100..1]
gi\|113527410, gi... - gi\|113868634\|ref\|YP_727123.1\| hypothetical protein H16_A2675 [Ralstonia eutropha H16], gi\|113527410\|...	136.0	[0..1]	[100..19]
gi\|119372785, gi... - gi\|69934085\|ref\|ZP_00629221.1\| conserved hypothetical protein [Paracoccus denitrificans PD1222], gi\|...	135.0	[0..1]	[97..1]
gi\|77962065 - gi\|77962065\|ref\|ZP_00825891.1\| COG4680: Uncharacterized protein conserved in bacteria [Yersinia moll...	134.0	[0..1]	[100..8]
RPA3131 - RPA3131 conserved hypothetical protein 3538617:3538934 reverse MW:12023	132.0	[0..1]	[97..6]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVIALSTLR QFWEKHPAAE QPLKAWVDEA SKARWAPPAD IKAQYRSASV LKNRRVVFNI  60
   61 KGNDYRLIVA VAFKLGIVYV KFVGTHVEYD RVDAETVEME

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.995
Match:	1wmiA
Description:	Crystal structure of archaeal RelE-RelB complex from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits