YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33601594, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33601594, gi|....

Description	E-value	Query Range	Subject Range
gi\|33573189 - gi\|33573189\|emb\|CAE36841.1\| acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase ... gi\|33596186 - gi\|33596186\|ref\|NP_883829.1\| UDP-N-acetylglucosamine acyltransferase [Bordetella parapertussis 12822...	211.0	[0..1]	[264..1]
gi\|33592529, gi\|... - gi\|33592529\|ref\|NP_880173.1\| UDP-N-acetylglucosamine acyltransferase [Bordetella pertussis Tohama I]...	209.0	[0..1]	[264..1]
gi\|187478240, gi... - gi\|187478240\|ref\|YP_786264.1\| acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferas...	208.0	[0..1]	[264..1]
gi\|84362152, gi\|... - gi\|84362152\|ref\|ZP_00986787.1\| COG1043: Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acylt...	192.0	[0..3]	[263..2]
gi\|82411382, gi\|... - gi\|82703317\|ref\|YP_412883.1\| acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase ...	192.0	[0..3]	[263..4]
LPXA_BURXL - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Burkholderia xenovorans (s...	192.0	[0..1]	[263..1]
gi\|37680729, gi\|... - gi\|37680729\|ref\|NP_935338.1\| UDP-N-acetylglucosamine acyltransferase [Vibrio vulnificus YJ016], gi\|3...	191.0	[0..2]	[263..12]
gi\|120562173, gi... - gi\|120601944\|ref\|YP_966344.1\| UDP-N-acetylglucosamine acyltransferase [Desulfovibrio vulgaris subsp....	191.0	[0..1]	[262..1]
gi\|91795798, gi\|... - gi\|92112708\|ref\|YP_572636.1\| acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase ...	191.0	[0..5]	[263..2]
LPXA_VIBVY - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Vibrio vulnificus (strain ... LPXA_VIBVU - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Vibrio vulnificus GN=lpxA ... LPXA_VIBVU - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Vibrio vulnificus (strain ...	191.0	[0..2]	[263..5]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNIHPTAV VDPAAQIDSS VVIGPYSVVG PGVSIAAGTE VGAHCVLDGV TSIGRDNRFY  60
   61 RFCSIGGMPQ DKKYSGEPTR LVIGDRNTVR EFTTFNTGTV QDGGVTSIGD DNWIMAYVHI 120
  121 AHDCHIGNNT ILANSVQLGG HVQVGDWAIV GGLTGVHQFA KIGAHSMTGG NSSLMQDAPP 180
  181 FVLAAGNPCR PVGVNVEGLK RRGFSAAAIS ALRDAYKSIY RRGLSLDEAR AELRARQQAE 240
  241 PDVAEHLQTM LDFLDASTRG IIRP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.39794
Match:	2jf2A
Description:	No description for 2jf2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits