YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33601561, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33601561, gi|....

Description	E-value	Query Range	Subject Range
gi\|78067886, gi\|... - gi\|78067886\|ref\|YP_370655.1\| flagellar biosynthesis chaperone FliJ-like protein [Burkholderia sp. 38...	117.0	[0..1]	[146..1]
gi\|67544055, gi\|... - gi\|67544055\|ref\|ZP_00421985.1\| Flagellar FliJ protein [Burkholderia vietnamiensis G4], gi\|67534751\|g...	115.0	[0..1]	[146..24]
gi\|33592498, gi\|... - gi\|33592498\|ref\|NP_880142.1\| flagellar protein FliJ [Bordetella pertussis Tohama I], gi\|33572144\|emb...	112.0	[0..1]	[148..1]
gi\|84356108 - gi\|84356108\|ref\|ZP_00980972.1\| COG2882: Flagellar biosynthesis chaperone [Burkholderia cenocepacia P...	112.0	[0..1]	[146..1]
gi\|115353164, gi... - gi\|115353164\|ref\|YP_775003.1\| flagellar export protein FliJ [Burkholderia ambifaria AMMD], gi\|115283...	112.0	[0..1]	[146..1]
gi\|116691086, gi... - gi\|67666775\|ref\|ZP_00464016.1\| Flagellar FliJ protein [Burkholderia cenocepacia HI2424], gi\|67099701... gi\|67660005, gi\|... - gi\|67660005\|ref\|ZP_00457360.1\| Flagellar FliJ protein [Burkholderia cenocepacia AU 1054], gi\|6709248...	112.0	[0..1]	[146..1]
gi\|198034959, gi... - gi\|206558922\|ref\|YP_002229682.1\| flagellar FliJ protein [Burkholderia cenocepacia J2315], gi\|1980349... gi\|18182542 - gi\|18182542\|gb\|AAL65164.1\|AF453480_6 putative flagellar chaperone; FliJ [Burkholderia cepacia]	111.0	[0..1]	[146..1]
gi\|84363182 - gi\|84363182\|ref\|ZP_00987781.1\| COG2882: Flagellar biosynthesis chaperone [Burkholderia dolosa AUO158...	110.0	[0..1]	[146..1]
gi\|91689569, gi\|... - gi\|91785615\|ref\|YP_560821.1\| flagellar FliJ protein [Burkholderia xenovorans LB400], gi\|91689569\|gb\|...	109.0	[0..1]	[145..1]
gi\|33573157 - gi\|33573157\|emb\|CAE36808.1\| flagellar protein FliJ [Bordetella parapertussis] gi\|33596154 - gi\|33596154\|ref\|NP_883797.1\| flagellar protein FliJ [Bordetella parapertussis 12822]	105.0	[0..1]	[148..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSQLPLDML IGLAKDSTDE AARELGRLSA ERNNAEQQLN MLQDYRQDYL QRMQTAMQSG  60
   61 MSAADCHNYQ RFIATLDDAI GQQRHVLHRA EAHLNDGRLN WQQQKRKLNS FDTLAQRESR 120
  121 TQALLEARRE QRANDEYSAR LVRRQAGF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.45
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits