YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33575937, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33575937, gi|....

Description	E-value	Query Range	Subject Range
gi\|83652220, gi\|... - gi\|83718395\|ref\|YP_440643.1\| YaeQ family protein [Burkholderia thailandensis E264], gi\|83652220\|gb\|A...	278.0	[0..1]	[178..68]
gi\|115283246, gi... - gi\|74020326\|ref\|ZP_00690925.1\| YaeQ [Burkholderia ambifaria AMMD], gi\|72606976\|gb\|EAO42949.1\| YaeQ [...	275.0	[0..1]	[178..24]
gi\|83724354, gi\|... - gi\|83749016\|ref\|ZP_00946024.1\| Cellulose synthase operon C protein [Ralstonia solanacearum UW551], g... gi\|207744030, gi... - gi\|207744030\|ref\|YP_002260422.1\| hypothetical protein RSIPO_02212 [Ralstonia solanacearum IPO1609], ... gi\|206591481, gi... - gi\|207728236\|ref\|YP_002256630.1\| hypothetical protein RSMK04518 [Ralstonia solanacearum MolK2], gi\|2...	274.0	[0..1]	[178..1]
gi\|17427797 - gi\|17427797\|emb\|CAD14487.1\| conserved hypothetical protein [Ralstonia solanacearum GMI1000] gi\|17545504 - gi\|17545504\|ref\|NP_518906.1\| hypothetical protein RSc0785 [Ralstonia solanacearum GMI1000]	273.0	[0..1]	[178..1]
gi\|134297391, gi... - gi\|67549766\|ref\|ZP_00427614.1\| YaeQ [Burkholderia vietnamiensis G4], gi\|67528916\|gb\|EAM25807.1\| YaeQ...	273.0	[0..1]	[178..1]
gi\|75240220, gi\|... - gi\|75240220\|ref\|ZP_00724167.1\| COG4681: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|110342002, gi... - gi\|110640410\|ref\|YP_668138.1\| hypothetical protein ECP_0199 [Escherichia coli 536], gi\|110342002\|gb\|... gi\|218557132, gi... - gi\|218557132\|ref\|YP_002390045.1\| hypothetical protein ECS88_0202 [Escherichia coli S88], gi\|21836390... gi\|91070835, gi\|... - gi\|91209261\|ref\|YP_539247.1\| hypothetical protein UTI89_C0206 [Escherichia coli UTI89], gi\|91070835\|... gi\|218425630, gi... - gi\|218688066\|ref\|YP_002396278.1\| hypothetical protein ECED1_0197 [Escherichia coli ED1a], gi\|2184256... gi\|218368846, gi... - gi\|218698860\|ref\|YP_002406489.1\| hypothetical protein ECIAI39_0457 [Escherichia coli IAI39], gi\|2183... gi\|226902262, gi... - gi\|237704350\|ref\|ZP_04534831.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	273.0	[0..1]	[178..1]
gi\|46310688, gi\|... - gi\|78067979\|ref\|YP_370748.1\| YaeQ family protein [Burkholderia sp. 383], gi\|77968724\|gb\|ABB10104.1\| ...	273.0	[0..1]	[178..1]
gi\|82529761, gi\|... - gi\|82529761\|ref\|ZP_00889003.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|134247281, gi... - gi\|134281614\|ref\|ZP_01768322.1\| conserved hypothetical protein [Burkholderia pseudomallei 305], gi\|1... gi\|194316762, gi... - gi\|254174872\|ref\|ZP_04881533.1\| conserved hypothetical protein [Burkholderia mallei ATCC 10399], gi\|... gi\|217424001, gi... - gi\|217424001\|ref\|ZP_03455501.1\| conserved hypothetical protein [Burkholderia pseudomallei 576], gi\|2... gi\|167892229 - gi\|167892229\|ref\|ZP_02479631.1\| hypothetical protein Bpse7_00600 [Burkholderia pseudomallei 7894] gi\|167916986 - gi\|167916986\|ref\|ZP_02504077.1\| hypothetical protein BpseBC_00460 [Burkholderia pseudomallei BCC215] gi\|167822147 - gi\|167822147\|ref\|ZP_02453618.1\| hypothetical protein Bpseu9_00620 [Burkholderia pseudomallei 9] gi\|52208152, gi\|... - gi\|53717738\|ref\|YP_106724.1\| hypothetical protein BPSL0098 [Burkholderia pseudomallei K96243], gi\|52... gi\|167843750 - gi\|167843750\|ref\|ZP_02469258.1\| hypothetical protein BpseB_00570 [Burkholderia pseudomallei B7210] gi\|53724649, gi\|... - gi\|53724649\|ref\|YP_101957.1\| hypothetical protein BMA0113 [Burkholderia mallei ATCC 23344], gi\|52428... gi\|167001167, gi... - gi\|243062997\|gb\|EES45183.1\| conserved hypothetical protein [Burkholderia mallei PRL-20], gi\|16700116... gi\|85066500 - gi\|85066500\|ref\|ZP_01027353.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|254359600, gi... - gi\|87313556\|ref\|ZP_01094649.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|84521761, gi\|... - gi\|84521761\|ref\|ZP_01008897.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|67758949, gi\|... - gi\|67758949\|ref\|ZP_00497697.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|76808593, gi\|... - gi\|76808593\|ref\|YP_331736.1\| YaeQ protein [Burkholderia pseudomallei 1710b], gi\|76578046\|gb\|ABA47521... gi\|124293475, gi... - gi\|124385455\|ref\|YP_001028211.1\| hypothetical protein BMA10229_A2247 [Burkholderia mallei NCTC 10229... gi\|100913801, gi... - gi\|67634183\|ref\|ZP_00433168.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|67641035, gi\|... - gi\|67641035\|ref\|ZP_00439823.1\| YaeQ protein [Burkholderia mallei GB8 horse 4], gi\|238521883\|gb\|EEP85... gi\|194523956, gi... - gi\|83618571\|ref\|ZP_00929028.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|147752945, gi... - gi\|83623696\|ref\|ZP_00933960.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|67680722, gi\|... - gi\|90290584\|ref\|ZP_01210236.1\| hypothetical protein Bpse17_02004744 [Burkholderia pseudomallei 1710a... gi\|226193079, gi... - gi\|226193079\|ref\|ZP_03788689.1\| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9... gi\|126441653, gi... - gi\|67735134\|ref\|ZP_00486167.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|126243748, gi... - gi\|67644769\|ref\|ZP_00443136.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|67670458, gi\|... - gi\|99909034\|ref\|ZP_01316624.1\| hypothetical protein Bpse1_03004049 [Burkholderia pseudomallei 1655],...	273.0	[0..1]	[178..1]
gi\|91785797, gi\|... - gi\|91785797\|ref\|YP_561003.1\| hypothetical protein Bxe_A4480 [Burkholderia xenovorans LB400], gi\|9168...	273.0	[0..1]	[178..1]
gi\|190902919, gi... - gi\|75229825\|ref\|ZP_00716352.1\| COG4681: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|157159656, gi... - gi\|75194401\|ref\|ZP_00704471.1\| COG4681: Uncharacterized protein conserved in bacteria [Escherichia c...	272.0	[0..1]	[178..1]

Back

Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRATIYKA DLHVADTDRH YYASHGLTIA RHPSETDERM MVRVLAYALH ADEQLAFTKG  60
   61 LSDTDEPDLW RKDLTGDIEL WVEVGQPDER RILKACGRAA EVVVYCYGGH ASQVWWDGVR 120
  121 GKLERARNLR VVCLPAAQTE ALAQLARRTM QVHVNISDGA AFVSTDEGQV QVEPQSWR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.522879
Match:	2g3wA
Description:	No description for 2g3wA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.050018926486278	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: