YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33601120, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33601120, gi|....

Description	E-value	Query Range	Subject Range
gi\|33572227, gi\|... - gi\|33592581\|ref\|NP_880225.1\| hypothetical protein BP1488 [Bordetella pertussis Tohama I], gi\|3357222...	198.0	[0..1]	[209..1]
gi\|33599276, gi\|... - gi\|33599276\|ref\|NP_886836.1\| hypothetical protein BB0287 [Bordetella bronchiseptica RB50], gi\|335753...	198.0	[0..1]	[209..1]
gi\|33566336 - gi\|33566336\|emb\|CAE37249.1\| putative membrane protein [Bordetella parapertussis] gi\|33596567 - gi\|33596567\|ref\|NP_884210.1\| hypothetical protein BPP1949 [Bordetella parapertussis 12822]	197.0	[0..1]	[209..1]
gi\|77463671, gi\|... - gi\|77463671\|ref\|YP_353175.1\| TRAP dicarboxylate family transporter DctQ subunit [Rhodobacter sphaero... gi\|221639514, gi... - gi\|221639514\|ref\|YP_002525776.1\| Tripartite ATP-independent periplasmic transporter, DctQ component ...	159.0	[0..1]	[198..1]
gi\|55980163, gi\|... - gi\|55980163\|ref\|YP_143460.1\| tripartite transporter, small subunit [Thermus thermophilus HB8], gi\|55...	158.0	[0..1]	[178..1]
gi\|73540400, gi\|... - gi\|73540400\|ref\|YP_294920.1\| tripartite ATP-independent periplasmic transporter DctQ [Ralstonia eutr...	157.0	[0..1]	[166..1]
gi\|126104167, gi... - gi\|83374622\|ref\|ZP_00919392.1\| conserved hypothetical protein [Rhodobacter sphaeroides ATCC 17029], ...	156.0	[0..1]	[198..1]
gi\|25524240, gi\|... - pir\|\|AE2970 conserved hypothetical protein Atu3366 [imported] - Agrobacterium tumefaciens (strain C5... gi\|17741755, gi\|... - gi\|17937074\|ref\|NP_533863.1\| hypothetical protein Atu3366 [Agrobacterium tumefaciens str. C58], gi\|1...	156.0	[0..1]	[166..32]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALLALSRG IDALNLRVGR AVTWVTLLVV LVSAGNAVVR KVFHSSSNAW LELQWYMFGA  60
   61 MFLLTAGYTL LKNEHVRVDI LSSRLPRHKQ IWIEIFGVVF FLLPACILIM VLSWPVFMDS 120
  121 YLSGEQSSNS GGLIRWPVKL LIPVGFALLV LAGLSHLIKC IGFLRGQCPD PTAREGSKSA 180
  181 EELLAEEIAR EALEREASVQ EQRNNHEGR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.769551
Match:	PF04290.3
Description:	No description for PF04290.3 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits