YRC Public Data Repository - Protein Structure Prediction

Protein:	IHFA_BORPA
Organism:	Bordetella parapertussis 12822
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IHFA_BORPA.

Description	E-value	Query Range	Subject Range
IHFA_BORPE - Integration host factor subunit alpha OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC... IHFA_BORPE - Integration host factor subunit alpha OS=Bordetella pertussis GN=ihfA PE=3 SV=1	138.0	[0..1]	[113..1]
gi\|113724087, gi... - gi\|113875483\|ref\|ZP_01415608.1\| nucleoid DNA-binding protein-like [Sinorhizobium medicae WSM419], gi...	126.0	[0..12]	[101..101]
IHFB_RHORT - Integration host factor subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 4...	124.0	[0..12]	[110..1]
IHFA_BORA1 - Integration host factor subunit alpha OS=Bordetella avium (strain 197N) GN=ihfA PE=3 SV=1	122.0	[0..1]	[113..1]
gi\|255663662, gi... - gi\|83720646\|ref\|YP_443105.1\| integration host factor subunit alpha [Burkholderia thailandensis E264]... gi\|167620270 - gi\|167620270\|ref\|ZP_02388901.1\| integration host factor subunit alpha [Burkholderia thailandensis Bt... gi\|167582112 - gi\|167582112\|ref\|ZP_02374986.1\| integration host factor subunit alpha [Burkholderia thailandensis TX...	122.0	[0..3]	[107..27]
gi\|31789462 - gi\|31789462\|gb\|AAP58576.1\| putative DNA-binding protein [uncultured Acidobacteria bacterium]	122.0	[0..12]	[106..1]
gi\|83725035, gi\|... - gi\|83748303\|ref\|ZP_00945328.1\| Integration host factor alpha-subunit [Ralstonia solanacearum UW551],...	121.0	[0..7]	[106..70]
IHFB_RHOPA - Integration host factor subunit beta OS=Rhodopseudomonas palustris GN=ihfB PE=3 SV=1 ihfB - ihfB integration host factor beta chain 73388:73702 forward MW:11674 IHFB_RHOPT - Integration host factor subunit beta OS=Rhodopseudomonas palustris (strain TIE-1) GN=ihfB PE=3 SV=1	120.0	[0..12]	[112..1]
gi\|29895202, gi\|... - gi\|30019658\|ref\|NP_831289.1\| DNA-binding protein HU [Bacillus cereus ATCC 14579], gi\|29895202\|gb\|AAP... gi\|74488445, gi\|... - gi\|75764066\|ref\|ZP_00743668.1\| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis AT...	120.0	[0..12]	[101..25]
IHFB_RHIME - Integration host factor subunit beta OS=Rhizobium meliloti GN=ihfB PE=3 SV=1 IHFB_RHIME - Integration host factor subunit beta OS=Rhizobium meliloti (strain 1021) GN=ihfB PE=3 SV=1	120.0	[0..12]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTTMLAEPR TLTKAELAEL LFERVGLNKR EAKDIVDTFF EEIRDALARG DSVKLSGFGN  60
   61 FQVRDKPPRP GRNPKTGETI PIAARRVVTF HASQKLKSVV EQPSSPPDPA SAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	2iifA
Description:	No description for 2iifA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits