YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33597054
Organism:	Bordetella parapertussis 12822
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33597054.

Description	E-value	Query Range	Subject Range
RS6_BURXL - 30S ribosomal protein S6 OS=Burkholderia xenovorans (strain LB400) GN=rpsF PE=3 SV=1 RS6_BURPP - 30S ribosomal protein S6 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpsF PE=3 SV=1 gi\|170692292, gi... - gi\|170692292\|ref\|ZP_02883455.1\| ribosomal protein S6 [Burkholderia graminis C4D1M], gi\|170142722\|gb\|...	170.0	[0..32]	[155..1]
gi\|90414464, gi\|... - gi\|90414464\|ref\|ZP_01222440.1\| 30S ribosomal protein S6 [Photobacterium profundum 3TCK], gi\|90324469...	170.0	[0..32]	[156..1]
RS6_PHOPR - 30S ribosomal protein S6 OS=Photobacterium profundum GN=rpsF PE=3 SV=1 RS6_PHOPR - 30S ribosomal protein S6 OS=Photobacterium profundum (strain SS9) GN=rpsF PE=3 SV=1	169.0	[0..32]	[156..1]
gi\|166961388, gi... - gi\|167420582\|ref\|ZP_02312335.1\| ribosomal protein S6 [Yersinia pestis biovar Orientalis str. MG05-10... gi\|229695559, gi... - gi\|229839193\|ref\|ZP_04459352.1\| 30S ribosomal subunit protein S6 [Yersinia pestis biovar Orientalis ... gi\|167423107, gi... - gi\|167423107\|ref\|ZP_02314860.1\| ribosomal protein S6 [Yersinia pestis biovar Mediaevalis str. K19730... gi\|229836649, gi... - gi\|229836649\|ref\|ZP_04456815.1\| 30S ribosomal subunit protein S6 [Yersinia pestis Pestoides A], gi\|2... RS6_YERPY - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rpsF PE=3 SV=... RS6_YERPB - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rpsF PE=3 SV=1 gi\|165919840, gi... - gi\|165928153\|ref\|ZP_02223985.1\| ribosomal protein S6 [Yersinia pestis biovar Orientalis str. F199101... gi\|165989687, gi... - gi\|166011303\|ref\|ZP_02232201.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. E1979001],... gi\|166214044, gi... - gi\|166214044\|ref\|ZP_02240079.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. B42003004]... gi\|167049370, gi... - gi\|167401345\|ref\|ZP_02306845.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. UG05-0454]... RS6_YERE8 - 30S ribosomal protein S6 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8... gi\|165937530, gi... - gi\|89102329\|ref\|ZP_01174971.1\| COG0360: Ribosomal protein S6 [Yersinia pestis biovar Orientalis str.... RS6_YERPA - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpsF PE=3 SV=1 RS6_YERPN - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpsF PE=3 SV=1 gi\|149288953, gi... - gi\|153997316\|ref\|ZP_02022416.1\| 30S ribosomal protein S6 [Yersinia pestis CA88-4125], gi\|149288953\|g... gi\|45435253, gi\|... - gi\|45440396\|ref\|NP_991935.1\| 30S ribosomal protein S6 [Yersinia pestis biovar Microtus str. 91001], ... gi\|22124559, gi\|... - gi\|22124559\|ref\|NP_667982.1\| 30S ribosomal protein S6 [Yersinia pestis KIM], gi\|21957359\|gb\|AAM84233... gi\|15981463, gi\|... - gi\|218930553\|ref\|YP_002348428.1\| 30S ribosomal protein S6 [Yersinia pestis CO92], gi\|16123685\|ref\|NP... RS6_YERPS - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rpsF PE=3 SV=... gi\|77961292 - gi\|77961292\|ref\|ZP_00825133.1\| COG0360: Ribosomal protein S6 [Yersinia mollaretii ATCC 43969] RS6_YERPS - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis GN=rpsF PE=3 SV=1 gi\|77958749 - gi\|77958749\|ref\|ZP_00822777.1\| COG0360: Ribosomal protein S6 [Yersinia bercovieri ATCC 43970] RS6_YERPG - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rpsF PE=3 SV=1 RS6_YERP3 - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rpsF PE=3... RS6_YERPE - 30S ribosomal protein S6 OS=Yersinia pestis GN=rpsF PE=3 SV=1 gi\|77973976 - gi\|77973976\|ref\|ZP_00829519.1\| COG0360: Ribosomal protein S6 [Yersinia frederiksenii ATCC 33641] gi\|77977622 - gi\|77977622\|ref\|ZP_00833066.1\| COG0360: Ribosomal protein S6 [Yersinia intermedia ATCC 29909] gi\|229899757, gi... - gi\|229899757\|ref\|ZP_04514898.1\| 30S ribosomal subunit protein S6 [Yersinia pestis biovar Orientalis ...	165.0	[0..32]	[157..1]
RS6_BURTA - 30S ribosomal protein S6 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP ... RS6_BURP1 - 30S ribosomal protein S6 OS=Burkholderia pseudomallei (strain 1710b) GN=rpsF PE=3 SV=1 gi\|85064557 - gi\|85064557\|ref\|ZP_01025410.1\| COG0360: Ribosomal protein S6 [Burkholderia mallei 10229] gi\|254358246, gi... - gi\|87316161\|ref\|ZP_01097181.1\| COG0360: Ribosomal protein S6 [Burkholderia mallei 2002721280], gi\|25... gi\|254179490, gi... - gi\|99913246\|ref\|ZP_01319904.1\| hypothetical protein Bpse1_03000804 [Burkholderia pseudomallei 1655],... gi\|254258001, gi... - gi\|90290356\|ref\|ZP_01210019.1\| hypothetical protein Bpse17_02004971 [Burkholderia pseudomallei 1710a... gi\|238520890, gi... - gi\|67640204\|ref\|ZP_00439019.1\| 30S ribosomal protein S6 [Burkholderia mallei GB8 horse 4], gi\|238520... RS6_BURM7 - 30S ribosomal protein S6 OS=Burkholderia mallei (strain NCTC 10247) GN=rpsF PE=3 SV=1 gi\|157936797, gi... - gi\|67755452\|ref\|ZP_00494346.1\| COG0360: Ribosomal protein S6 [Burkholderia pseudomallei Pasteur], gi... gi\|169654724, gi... - gi\|67763035\|ref\|ZP_00501732.1\| COG0360: Ribosomal protein S6 [Burkholderia pseudomallei S13], gi\|254... RS6_BURP6 - 30S ribosomal protein S6 OS=Burkholderia pseudomallei (strain 668) GN=rpsF PE=3 SV=1 RS6_BURMS - 30S ribosomal protein S6 OS=Burkholderia mallei (strain SAVP1) GN=rpsF PE=3 SV=1 RS6_BURP0 - 30S ribosomal protein S6 OS=Burkholderia pseudomallei (strain 1106a) GN=rpsF PE=3 SV=1 RS6_BURMA - 30S ribosomal protein S6 OS=Burkholderia mallei GN=rpsF PE=3 SV=1 gi\|82536153, gi\|... - gi\|82536153\|ref\|ZP_00895162.1\| hypothetical protein Bpse110_02002637 [Burkholderia pseudomallei 1106... RS6_BURPS - 30S ribosomal protein S6 OS=Burkholderia pseudomallei GN=rpsF PE=3 SV=1 gi\|83680026, gi\|... - gi\|83680026\|ref\|ZP_00941735.1\| COG0360: Ribosomal protein S6 [Burkholderia pseudomallei 406e], gi\|25... gi\|67635449, gi\|... - gi\|67635449\|ref\|ZP_00434405.1\| COG0360: Ribosomal protein S6 [Burkholderia mallei 10399], gi\|1009149... gi\|167002904 - gi\|167002904\|ref\|ZP_02268694.1\| 30S ribosomal protein S6 [Burkholderia mallei PRL-20] gi\|83620445, gi\|... - gi\|83620445\|ref\|ZP_00930864.1\| COG0360: Ribosomal protein S6 [Burkholderia mallei FMH], gi\|254200006... gi\|254206339, gi... - gi\|83625723\|ref\|ZP_00935952.1\| COG0360: Ribosomal protein S6 [Burkholderia mallei JHU], gi\|254206339... RS6_BURPS - 30S ribosomal protein S6 OS=Burkholderia pseudomallei (strain K96243) GN=rpsF PE=3 SV=1 RS6_BURMA - 30S ribosomal protein S6 OS=Burkholderia mallei (strain ATCC 23344) GN=rpsF PE=3 SV=1 gi\|167918592 - gi\|167918592\|ref\|ZP_02505683.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei BCC215] gi\|254178587, gi... - gi\|254178587\|ref\|ZP_04885242.1\| 30S ribosomal protein S6 [Burkholderia mallei ATCC 10399], gi\|194314... gi\|167902328 - gi\|167902328\|ref\|ZP_02489533.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei NCTC 13177] gi\|167910566 - gi\|167910566\|ref\|ZP_02497657.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 112] RS6_BURM9 - 30S ribosomal protein S6 OS=Burkholderia mallei (strain NCTC 10229) GN=rpsF PE=3 SV=1 gi\|217421378, gi... - gi\|217421378\|ref\|ZP_03452882.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 576], gi\|2173951... gi\|167719190 - gi\|167719190\|ref\|ZP_02402426.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei DM98] gi\|167738192 - gi\|167738192\|ref\|ZP_02410966.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 14] gi\|134251526, gi... - gi\|134277876\|ref\|ZP_01764591.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 305], gi\|1342515... gi\|167581639 - gi\|167581639\|ref\|ZP_02374513.1\| 30S ribosomal protein S6 [Burkholderia thailandensis TXDOH] gi\|226197319, gi... - gi\|226197319\|ref\|ZP_03792896.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei Pakistan 9], gi\|... gi\|167619759 - gi\|167619759\|ref\|ZP_02388390.1\| 30S ribosomal protein S6 [Burkholderia thailandensis Bt4] gi\|167845332 - gi\|167845332\|ref\|ZP_02470840.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei B7210] gi\|167893874 - gi\|167893874\|ref\|ZP_02481276.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 7894] gi\|237503908, gi... - gi\|237812613\|ref\|YP_002897064.1\| ribosomal protein S6 [Burkholderia pseudomallei MSHR346], gi\|237503... gi\|167815381 - gi\|167815381\|ref\|ZP_02447061.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 91] gi\|167823789 - gi\|167823789\|ref\|ZP_02455260.1\| 30S ribosomal protein S6 [Burkholderia pseudomallei 9]	165.0	[0..32]	[155..1]
gi\|221182078, gi... - gi\|221198146\|ref\|ZP_03571192.1\| 30S ribosomal protein S6 [Burkholderia multivorans CGD2M], gi\|221182... RS6_BURL3 - 30S ribosomal protein S6 OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194 /... gi\|221208363, gi... - gi\|221208363\|ref\|ZP_03581366.1\| 30S ribosomal protein S6 [Burkholderia multivorans CGD2], gi\|2211717... gi\|167586986 - gi\|167586986\|ref\|ZP_02379374.1\| ribosomal protein S6 [Burkholderia ubonensis Bu] gi\|221165050, gi... - gi\|221215114\|ref\|ZP_03588081.1\| 30S ribosomal protein S6 [Burkholderia multivorans CGD1], gi\|2211650... RS6_BURS3 - 30S ribosomal protein S6 OS=Burkholderia sp. (strain 383) GN=rpsF PE=3 SV=1 RS6_BURM1 - 30S ribosomal protein S6 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rpsF PE=3 SV=1 gi\|84362015 - gi\|84362015\|ref\|ZP_00986652.1\| COG0360: Ribosomal protein S6 [Burkholderia dolosa AUO158]	165.0	[0..32]	[155..1]
EG10905 - 30S ribosomal subunit protein S6 / 30S ribosomal subunit protein S6; suppressor of dnaG-Ts RS6_ECOLI - 30S ribosomal protein S6 [Contains: 30S ribosomal protein S6, fully modified isoform; 30S ribosomal ... EG10905 - 30S ribosomal subunit protein S6 / 30S ribosomal subunit protein S6; suppressor of dnaG-Ts	165.0	[0..32]	[157..1]
RS6_BURA4 - 30S ribosomal protein S6 OS=Burkholderia ambifaria (strain MC40-6) GN=rpsF PE=3 SV=1 RS6_BURVG - 30S ribosomal protein S6 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpsF PE=3 SV=1 gi\|170131642, gi... - gi\|170703444\|ref\|ZP_02894215.1\| ribosomal protein S6 [Burkholderia ambifaria IOP40-10], gi\|170131642... gi\|171093123, gi... - gi\|171321590\|ref\|ZP_02910521.1\| ribosomal protein S6 [Burkholderia ambifaria MEX-5], gi\|171093123\|gb... RS6_BURCM - 30S ribosomal protein S6 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rpsF PE=3 SV=1	164.0	[0..32]	[155..1]
gi\|90581366, gi\|... - gi\|90581366\|ref\|ZP_01237162.1\| 30S ribosomal protein S6 [Vibrio angustum S14], gi\|90437476\|gb\|EAS626...	164.0	[0..32]	[157..1]
gi\|89075974, gi\|... - gi\|89075974\|ref\|ZP_01162346.1\| 30S ribosomal protein S6 [Photobacterium sp. SKA34], gi\|89048323\|gb\|E...	164.0	[0..32]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDCLVLGGG LSLAGASIAW LAGETSSRSP YMRHYEVVFI VHPDQSEQVP AMVERYQALV  60
   61 TGQSGTVHRL EDWGRRQLAY PIQKLVKAHY VCMNIECGQA TLDELEHSFR YNDAVLRHLV 120
  121 IKTKKAPAAP SIMMKSVERE EARKASAEAA ATATAAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.221849
Match:	1p6gF
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.72663177460478	bayes_pls_golite062009
structural molecule activity	9.15324307340032	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: