YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33567208, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33567208, gi|....

Description	E-value	Query Range	Subject Range
gi\|33595317 - gi\|33595317\|ref\|NP_882960.1\| hypothetical protein BPP0616 [Bordetella parapertussis 12822] gi\|33565394 - gi\|33565394\|emb\|CAE36201.1\| conserved hypothetical protein [Bordetella parapertussis]	274.0	[0..1]	[282..1]
gi\|93356677, gi\|... - gi\|94312825\|ref\|YP_586034.1\| hypothetical protein Rmet_3897 [Ralstonia metallidurans CH34], gi\|93356... gi\|222872792, gi... - gi\|224163456\|ref\|XP_002338561.1\| predicted protein [Populus trichocarpa], gi\|222872792\|gb\|EEF09923.1...	268.0	[0..1]	[282..1]
gi\|72120710, gi\|... - gi\|73537373\|ref\|YP_297740.1\| hypothetical protein Reut_B3538 [Ralstonia eutropha JMP134], gi\|7212071...	266.0	[0..7]	[282..8]
gi\|46315875, gi\|... - gi\|78060833\|ref\|YP_367408.1\| hypothetical protein Bcep18194_C7720 [Burkholderia sp. 383], gi\|7796538...	263.0	[0..3]	[281..8]
gi\|91777550, gi\|... - gi\|91777550\|ref\|YP_552758.1\| hypothetical protein Bxe_B2585 [Burkholderia xenovorans LB400], gi\|9169...	260.0	[0..6]	[281..5]
gi\|134137228, gi... - gi\|67545946\|ref\|ZP_00423864.1\| conserved hypothetical protein [Burkholderia vietnamiensis G4], gi\|67...	257.0	[0..1]	[281..1]
gi\|145589423, gi... - gi\|145589423\|ref\|YP_001156020.1\| hypothetical protein Pnuc_1241 [Polynucleobacter necessarius subsp....	253.0	[0..1]	[281..6]
gi\|27382358, gi\|... - gi\|27382358\|ref\|NP_773887.1\| putative cytoplasmic protein [Bradyrhizobium japonicum USDA 110], gi\|27...	252.0	[0..5]	[279..6]
gi\|84352304 - gi\|84352304\|ref\|ZP_00977271.1\| COG3777: Uncharacterized conserved protein [Burkholderia cenocepacia ...	252.0	[0..3]	[281..8]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPDNPPSYD AWIGRTETSA DQIGPTPIRL LRGTLDDEHA SALPAHLPPL WHWLYFLPGE  60
   61 RQSSIGPDGH PRRGGFLPPI ALPRRMWAGG RLRFLRPLAV GAAVTRLSTI RHVQVKPGRS 120
  121 GQLVFVTVLH EIGDDAGVAI REEQDIVYRD APAAGAPAPQ PTPAPADEQY SRVITPDPVL 180
  181 LMRFSALTFN GHRIHYDRPY AMQEEGYPGL VVHGPLIATL LMEELRRNHP GKTVRGFEFK 240
  241 AVSPLFDTAA FSVNGKVAGN TAQLWARGPQ GQLAMRASAE IE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.09691
Match:	1s9cA
Description:	Crystal structure analysis of the 2-enoyl-CoA hydratase 2 domain of human peroxisomal multifunctional enzyme type 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits