YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33599276, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33599276, gi|....

Description	E-value	Query Range	Subject Range
gi\|33572227, gi\|... - gi\|33592581\|ref\|NP_880225.1\| hypothetical protein BP1488 [Bordetella pertussis Tohama I], gi\|3357222...	198.0	[0..1]	[209..1]
gi\|33601120, gi\|... - gi\|33601120\|ref\|NP_888680.1\| hypothetical protein BB2137 [Bordetella bronchiseptica RB50], gi\|335755...	198.0	[0..1]	[209..1]
gi\|33566336 - gi\|33566336\|emb\|CAE37249.1\| putative membrane protein [Bordetella parapertussis] gi\|33596567 - gi\|33596567\|ref\|NP_884210.1\| hypothetical protein BPP1949 [Bordetella parapertussis 12822]	197.0	[0..1]	[209..1]
gi\|77463671, gi\|... - gi\|77463671\|ref\|YP_353175.1\| TRAP dicarboxylate family transporter DctQ subunit [Rhodobacter sphaero... gi\|221639514, gi... - gi\|221639514\|ref\|YP_002525776.1\| Tripartite ATP-independent periplasmic transporter, DctQ component ...	160.0	[0..1]	[198..1]
gi\|55980163, gi\|... - gi\|55980163\|ref\|YP_143460.1\| tripartite transporter, small subunit [Thermus thermophilus HB8], gi\|55...	159.0	[0..1]	[178..1]
gi\|126104167, gi... - gi\|83374622\|ref\|ZP_00919392.1\| conserved hypothetical protein [Rhodobacter sphaeroides ATCC 17029], ...	157.0	[0..1]	[198..1]
gi\|73540400, gi\|... - gi\|73540400\|ref\|YP_294920.1\| tripartite ATP-independent periplasmic transporter DctQ [Ralstonia eutr...	157.0	[0..1]	[166..1]
gi\|27352011, gi\|... - gi\|27378862\|ref\|NP_770391.1\| hypothetical protein bll3751 [Bradyrhizobium japonicum USDA 110], gi\|27...	157.0	[0..1]	[172..1]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALLALSRG IDALNLRVGR AVTWVTLLVV LVSAGNAVVR KVFHSSSNAW LELQWYMFGA  60
   61 MFLLTAGYTL LKNEHVRVDI LSSRLPRHKQ IWIEIFGVVF FLLPACILIM VLSWPVFMDS 120
  121 YLSGEQSSNS GGLIRWPVKL LIPVGFALLV LAGLSHLIKC IGFLRGQCPD PTAREGSKSA 180
  181 EELLAEEIAR EALEREASVQ EQRNNHEGR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.769551
Match:	PF04290.3
Description:	No description for PF04290.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits