YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1653962, gi\|1...
Organism:	Synechocystis sp. PCC 6803
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1653962, gi|1....

Description	E-value	Query Range	Subject Range
gi\|23095254, gi\|... - gi\|25010875\|ref\|NP_735270.1\| hypothetical protein gbs0820 [Streptococcus agalactiae NEM316], gi\|2309... gi\|77160354, gi\|... - gi\|77413588\|ref\|ZP_00789775.1\| glutathione S-transferase family protein [Streptococcus agalactiae 51...	307.0	[0..1]	[318..1]
gi\|77172505, gi\|... - gi\|77408866\|ref\|ZP_00785592.1\| glutathione S-transferase family protein [Streptococcus agalactiae CO...	306.0	[0..1]	[318..1]
gi\|80976232, gi\|... - gi\|81177082\|ref\|ZP_00875977.1\| Glutathione S-transferase, C-terminal [Streptococcus suis 89/1591], g...	305.0	[0..1]	[318..1]
gi\|77174818, gi\|... - gi\|77406565\|ref\|ZP_00783614.1\| glutathione S-transferase family protein [Streptococcus agalactiae H3... gi\|76799793, gi\|... - gi\|76799793\|ref\|ZP_00781865.1\| glutathione S-transferase family protein [Streptococcus agalactiae 18... gi\|22533818, gi\|... - gi\|22536964\|ref\|NP_687815.1\| glutathione S-transferase family protein [Streptococcus agalactiae 2603... gi\|76563645, gi\|... - gi\|76788588\|ref\|YP_329547.1\| glutathione S-transferase domain-containing protein [Streptococcus agal... gi\|77162606, gi\|... - gi\|77411346\|ref\|ZP_00787694.1\| glutathione S-transferase family protein [Streptococcus agalactiae CJ...	305.0	[0..1]	[318..1]
gi\|93354450, gi\|... - gi\|94310598\|ref\|YP_583808.1\| glutathione S-transferase-like protein [Ralstonia metallidurans CH34], ...	304.0	[0..1]	[317..1]
gi\|254708229 - gi\|254708229\|ref\|ZP_05170057.1\| Glutathione S-transferase, C-terminal [Brucella pinnipedialis M163/9... gi\|82616469 - gi\|82616469\|emb\|CAJ11534.1\| Glutathione S-transferase, C-terminal [Brucella melitensis biovar Abortu... gi\|254710598 - gi\|254710598\|ref\|ZP_05172409.1\| Glutathione S-transferase, C-terminal [Brucella pinnipedialis B2/94] gi\|254697892 - gi\|254697892\|ref\|ZP_05159720.1\| Glutathione S-transferase, C-terminal [Brucella abortus bv. 2 str. 8... gi\|254702282 - gi\|254702282\|ref\|ZP_05164110.1\| Glutathione S-transferase, C-terminal [Brucella suis bv. 5 str. 513] gi\|189024675, gi... - gi\|189024675\|ref\|YP_001935443.1\| Glutathione S-transferase, C-terminal [Brucella abortus S19], gi\|18... gi\|254730782 - gi\|254730782\|ref\|ZP_05189360.1\| Glutathione S-transferase, C-terminal [Brucella abortus bv. 4 str. 2... gi\|82700368 - gi\|82700368\|ref\|YP_414942.1\| glutathione S-transferase [Brucella melitensis biovar Abortus 2308] gi\|237815953, gi... - gi\|237815953\|ref\|ZP_04594950.1\| glutathione S-transferase domain-containing protein [Brucella abortu... gi\|254694236 - gi\|254694236\|ref\|ZP_05156064.1\| Glutathione S-transferase, C-terminal [Brucella abortus bv. 3 str. T... gi\|62196577, gi\|... - gi\|62290445\|ref\|YP_222238.1\| glutathione S-transferase domain-containing protein [Brucella abortus b... gi\|225617164, gi... - gi\|225628001\|ref\|ZP_03786037.1\| glutathione S-transferase domain-containing protein [Brucella ceti s...	301.0	[0..1]	[319..1]
gi\|25346669 - pir\|\|AI3308 glutathione transferase (EC 2.5.1.18) [imported] - Brucella melitensis (strain 16M) gi\|17982364, gi\|... - gi\|17986738\|ref\|NP_539372.1\| glutathione S-transferase [Brucella melitensis 16M], gi\|17982364\|gb\|AAL...	300.0	[0..1]	[319..1]
gi\|161336315, gi... - gi\|161619504\|ref\|YP_001593391.1\| glutathione S-transferase [Brucella canis ATCC 23365], gi\|161336315... gi\|254704814 - gi\|254704814\|ref\|ZP_05166642.1\| glutathione S-transferase [Brucella suis bv. 3 str. 686] gi\|23502425, gi\|... - gi\|23502425\|ref\|NP_698552.1\| glutathione S-transferase domain-containing protein [Brucella suis 1330...	296.0	[0..1]	[319..1]
gi\|85695918, gi\|... - gi\|85717277\|ref\|ZP_01048232.1\| Glutathione S-transferase, C-terminal [Nitrobacter sp. Nb-311A], gi\|8...	295.0	[0..1]	[316..1]
gi\|25346667 - pir\|\|A97631 hypothetical 37.4K protein in exuR-tdcC intergenic region (o328) [imported] - Agrobacte... gi\|15889536, gi\|... - gi\|15889536\|ref\|NP_355217.1\| hypothetical protein AGR_C_4109 [Agrobacterium tumefaciens str. C58], g...	293.0	[0..1]	[319..57]

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Predicted Domain #1

Region A:
Residues: [1-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLVNGIWQ DQWYDTESTG GRFVRHDSQF RHWITPDGSP GPTGHGGFKA EAGRYHLYVS  60
   61 LACPWAHRTL IFRKLKGLEG MIDVSVVHWL MRENGWTFAP GPGVMPDPLF NAEYLYQIYT 120
  121 RADAQYSGRV TVPILWDKQK QTIVNNESSE IIRIFNSAFD GLGAKSGDYY PKALRTQIDA 180
  181 LNDRIYHTIN NGVYKCGFAT TQTAYEEAIA PLFESLDWLE GILQGHQYLT GDEITEADWR 240
  241 LFTTLIRFDV VYVGHFKCNL RRIQDYPNLW RYLRDLYHQP GIAETVNFQH IKGHYYESHL 300
  301 NINPTGIVPM GPALDLSLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1eemA
Description:	Class omega GST
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glutathione binding	2.07086805531749	bayes_pls_golite062009
glutathione transferase activity	1.85683051472829	bayes_pls_golite062009
antioxidant activity	1.78836688224506	bayes_pls_golite062009
peroxidase activity	1.62851025934188	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	1.62851025934188	bayes_pls_golite062009
binding	1.1101496519064	bayes_pls_golite062009
glutathione peroxidase activity	1.08052084417939	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.0279404567142	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
peroxiredoxin activity	0.366096607480921	bayes_pls_golite062009
protein binding	0.341730456502484	bayes_pls_golite062009
selenium binding	0.237008126838281	bayes_pls_golite062009
thioredoxin peroxidase activity	0.163136748643487	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: