YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7437579
Organism:	Synechocystis sp.
Length:	513 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7437579.

Description	E-value	Query Range	Subject Range
gi\|23125364, gi\|... - gi\|23125364\|ref\|ZP_00107301.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Nostoc punctiforme PC...	499.0	[0..52]	[513..1]
SYN_SYNY3 - Asparaginyl-tRNA synthetase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=asnS PE=3 S... SYN_SYNY3 - Asparagine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=asnS PE=3 SV=2	496.0	[0..52]	[513..1]
gi\|75909835, gi\|... - gi\|75909835\|ref\|YP_324131.1\| asparaginyl-tRNA synthetase [Anabaena variabilis ATCC 29413], gi\|757035...	494.0	[0..52]	[513..1]
SYN_SYNEL - Asparaginyl-tRNA synthetase OS=Synechococcus elongatus GN=asnS PE=3 SV=1 SYN_THEEB - Asparagine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=asnS PE=3 SV=1	493.0	[0..56]	[513..4]
gi\|81299641, gi\|... - gi\|81299641\|ref\|YP_399849.1\| asparaginyl-tRNA synthetase [Synechococcus elongatus PCC 7942], gi\|8116...	493.0	[0..52]	[513..1]
gi\|25293068 - pir\|\|AC2263 asparaginyl-tRNA synthetase [imported] - Nostoc sp. (strain PCC 7120) SYN_NOSS1 - Asparagine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=asnS PE=3 SV=1	493.0	[0..52]	[513..1]
SYN_DESAG - Asparagine--tRNA ligase OS=Desulfovibrio alaskensis (strain G20) GN=asnS PE=3 SV=1	492.0	[0..52]	[513..1]
SYN_YERPS - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis GN=asnS PE=3 SV=1 SYN_YERP3 - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=asnS PE=3 ... SYN_YERPE - Asparagine--tRNA ligase OS=Yersinia pestis GN=asnS PE=3 SV=1 SYN_YERPA - Asparagine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=asnS PE=3 SV=1 SYN_YERPN - Asparagine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=asnS PE=3 SV=1 gi\|21959647, gi\|... - gi\|22126636\|ref\|NP_670059.1\| asparaginyl-tRNA synthetase [Yersinia pestis KIM], gi\|21959647\|gb\|AAM86... SYN_YERPS - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=asnS PE=3 SV=1 gi\|45441008, gi\|... - gi\|45441008\|ref\|NP_992547.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001... gi\|149366669, gi... - gi\|149366669\|ref\|ZP_01888703.1\| asparaginyl-tRNA synthetase [Yersinia pestis CA88-4125], gi\|14929104... gi\|15979461, gi\|... - gi\|218928560\|ref\|YP_002346435.1\| asparaginyl-tRNA synthetase [Yersinia pestis CO92], gi\|16121692\|ref... SYN_YERPP - Asparagine--tRNA ligase OS=Yersinia pestis (strain Pestoides F) GN=asnS PE=3 SV=1 gi\|229841386, gi... - gi\|229841386\|ref\|ZP_04461545.1\| asparaginyl tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|229843491, gi... - gi\|229843491\|ref\|ZP_04463637.1\| asparaginyl tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|165938931, gi... - gi\|165938931\|ref\|ZP_02227484.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|162419705, gi... - gi\|77636026\|ref\|ZP_00798104.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia pestis Angol... gi\|165924584, gi... - gi\|165924584\|ref\|ZP_02220416.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|167050713, gi... - gi\|167400005\|ref\|ZP_02305523.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG0... gi\|166207346, gi... - gi\|166211575\|ref\|ZP_02237610.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42... gi\|167057132, gi... - gi\|167424283\|ref\|ZP_02316036.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.... gi\|166962464, gi... - gi\|167419723\|ref\|ZP_02311476.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|186697881, gi... - gi\|186894855\|ref\|YP_001871967.1\| asparaginyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+], gi... gi\|169751407, gi... - gi\|170024873\|ref\|YP_001721378.1\| asparaginyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII], gi...	490.0	[0..66]	[513..16]
gi\|238728303, gi... - gi\|77979213\|ref\|ZP_00834633.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia intermedia A...	490.0	[0..66]	[513..16]
gi\|238722626, gi... - gi\|77974872\|ref\|ZP_00830410.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia frederikseni...	490.0	[0..66]	[513..16]

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Predicted Domain #1

Region A:
Residues: [1-513]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKIFFSGLV RFLSGLLGIA SCVGIGYPRI GSVPWFNSGT HCPSLSSSLG FMNKRRIIEV  60
   61 LRHGQADDQV MVQGWLRTKR TLKDFSFVEV NDGSSLANLQ VVLDGSLADY DRLLSQLQTG 120
  121 AALVVEGKLA PSPGKGQRVE LKATKLELLG GADPGSYPLQ KKRHSFEFLR TIGHLRPRTN 180
  181 TIGAVMRVRN ACATAIHQFF QERGFLWVHT PIITASDCEG AGDLFKVTTL DLQRVPKNGE 240
  241 GIDYSQDFFG KQAYLTVSGQ LEAEVMALAF QNVYTFGPTF RAENSNTSRH LAEFWMVEPE 300
  301 MAFCDLEGDR QWAEEFLKYI FKFVLEKCPE DMEFFDQRID NTVLATADNI INNEFAWLTY 360
  361 SEAIKLLEKA DQKFEYPVAW GVDLQSEHER YLAETVFKRP TIVTDYPKDI KAFYMRLNDD 420
  421 GKTVAAMDIL APKIGEIIGG SQREERLDIL TQRMQEQGVP EEDLWWYLDL RRYGSVPHAG 480
  481 FGLGFERIVQ FMTGMANIRD VIPFPRTPMN AEF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	112.0
Match:	1x54A
Description:	No description for 1x54A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits