YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1001341, gi\|1...
Organism:	Synechocystis sp. PCC 6803
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1001341, gi|1....

Description	E-value	Query Range	Subject Range
gi\|25295831 - pir\|\|AG2319 hypothetical protein all4110 [imported] - Nostoc sp. (strain PCC 7120) gi\|17231602, gi\|... - gi\|17231602\|ref\|NP_488150.1\| hypothetical protein all4110 [Nostoc sp. PCC 7120], gi\|17133245\|dbj\|BAB...	341.0	[0..12]	[381..1]
gi\|53764972, gi\|... - gi\|75907018\|ref\|YP_321314.1\| magnesium/cobalt transporter CorA [Anabaena variabilis ATCC 29413], gi\|...	338.0	[0..12]	[381..1]
gi\|186464154, gi... - gi\|23128303\|ref\|ZP_00110154.1\| COG0598: Mg2+ and Co2+ transporters [Nostoc punctiforme PCC 73102], g...	327.0	[0..12]	[382..1]
gi\|7441680 - pir\|\|S77053 magnesium/cobalt transport protein sll0671 - Synechocystis sp. (strain PCC 6803) gi\|1006592, gi\|1... - gi\|16331946\|ref\|NP_442674.1\| magnesium and cobalt transport protein [Synechocystis sp. PCC 6803], gi...	322.0	[0..21]	[386..8]
gi\|221564892, gi... - gi\|222055603\|ref\|YP_002537965.1\| magnesium and cobalt transport protein CorA [Geobacter sp. FRC-32],...	313.0	[0..32]	[378..7]
gi\|85544265, gi\|... - gi\|85544267\|pdb\|2BBJ\|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter, gi\|85544266\|pdb\|2BBJ...	310.0	[0..29]	[378..6]
gi\|35211586, gi\|... - gi\|37520592\|ref\|NP_923969.1\| cation transporter [Gloeobacter violaceus PCC 7421], gi\|35211586\|dbj\|BA...	310.0	[0..19]	[387..11]
CORA_THEMA - Cobalt/magnesium transport protein CorA OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 ... CORA_THEMA - Magnesium transport protein CorA OS=Thermotoga maritima GN=corA PE=1 SV=1	309.0	[0..29]	[378..3]
gi\|77920304, gi\|... - gi\|77920304\|ref\|YP_358119.1\| magnesium and cobalt transport protein CorA [Pelobacter carbinolicus DS...	306.0	[0..12]	[378..1]

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Predicted Domain #1

Region A:
Residues: [1-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQTQPGIED FLLRQLRHPQ EEEEEEDYFD YFYDEPGSEP GTLSIEPDAP PSRIVLVDYS  60
   61 PSHAVRKSDI SPNALRPYLG TNTVSWMDIE GLGSEEVLKE VGEIFKLHPL LLEDIVNVPQ 120
  121 RAKVEDYNDH VMVIAHRVRP NREEDGFESE QVSFVLGKRY LLTFQEGHII DCFNPLRERI 180
  181 RTNQGKVCQQ GADYLCYLLI DMLIDEYFPL LEDYEERIEA LEDTIIRNPN SSLMEEIYHI 240
  241 RRELLALRRL IWPLRHVMNV LLRDTTNSIV TADVRIYFRD CYDHIIQVLD IIEAYRELAS 300
  301 SLMEVYMTAM SNKMNEVMKF LTVISTIFIP LTFIAGVYGM NFKEMPELNS RWGYYITWIV 360
  361 MLLIAGGSLY FFWRKGWLSP SYDLGEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.39794
Match:	2bbjA
Description:	Crystal structure of the CorA Mg2+ transporter
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits