YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1006592, gi\|1...
Organism:	Synechocystis sp. PCC 6803
Length:	380 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1006592, gi|1....

Description	E-value	Query Range	Subject Range
gi\|25295831 - pir\|\|AG2319 hypothetical protein all4110 [imported] - Nostoc sp. (strain PCC 7120) gi\|17231602, gi\|... - gi\|17231602\|ref\|NP_488150.1\| hypothetical protein all4110 [Nostoc sp. PCC 7120], gi\|17133245\|dbj\|BAB...	358.0	[0..11]	[377..13]
gi\|53764972, gi\|... - gi\|75907018\|ref\|YP_321314.1\| magnesium/cobalt transporter CorA [Anabaena variabilis ATCC 29413], gi\|...	356.0	[0..11]	[377..13]
gi\|186464154, gi... - gi\|23128303\|ref\|ZP_00110154.1\| COG0598: Mg2+ and Co2+ transporters [Nostoc punctiforme PCC 73102], g...	343.0	[0..14]	[377..17]
gi\|35211586, gi\|... - gi\|37520592\|ref\|NP_923969.1\| cation transporter [Gloeobacter violaceus PCC 7421], gi\|35211586\|dbj\|BA...	334.0	[0..7]	[377..13]
gi\|221564892, gi... - gi\|222055603\|ref\|YP_002537965.1\| magnesium and cobalt transport protein CorA [Geobacter sp. FRC-32],...	322.0	[0..14]	[369..3]
gi\|85544265, gi\|... - gi\|85544267\|pdb\|2BBJ\|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter, gi\|85544266\|pdb\|2BBJ...	318.0	[0..16]	[369..7]
CORA_THEMA - Cobalt/magnesium transport protein CorA OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 ... CORA_THEMA - Magnesium transport protein CorA OS=Thermotoga maritima GN=corA PE=1 SV=1	317.0	[0..16]	[369..4]
gi\|78222404, gi\|... - gi\|78222404\|ref\|YP_384151.1\| magnesium/cobalt transporter CorA [Geobacter metallireducens GS-15], gi...	316.0	[0..17]	[368..17]
gi\|77920304, gi\|... - gi\|77920304\|ref\|YP_358119.1\| magnesium and cobalt transport protein CorA [Pelobacter carbinolicus DS...	314.0	[0..2]	[369..4]

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Predicted Domain #1

Region A:
Residues: [1-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNKPQFRQS NLVSHFNYFN SPESIPGTLN LSPNAPPPRI ILIDYNKNQA TKIELKNPLD  60
   61 CEAYVDTESV SWINIDGLGN HTTWEQLGEV FKLHPVALED IVNVPQRPKV VEYENHLIFI 120
  121 SRMVTLDQSS QTFISEQISF ILGKHYLLTI QEEPKYDCLF SVRERIRTKK GAIRQKNADY 180
  181 LFYALIDAII DGFFPVMEVY GELVQSLQSE IISCPTNKSL AKIHQLQQDL LIMRRAIWPQ 240
  241 RDAINSLLRD GSDLISDEVR VFLRDCYDHT IQILDMIETY RDLASNLTDI YLSSVSNRMN 300
  301 EIMKTLTVIS SIFIPLTFIA GIYGMNFNPD KSPWNMPELN WYWGYPVIWM VMLTVGGMML 360
  361 YFFWRKGWFR NLNDVEKGNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.69897
Match:	2bbjA
Description:	Crystal structure of the CorA Mg2+ transporter
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits