YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16331945, gi\|...
Organism:	Synechocystis sp. PCC 6803
Length:	945 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16331945, gi|....

Description	E-value	Query Range	Subject Range
gi\|114558784 - gi\|114558784\|ref\|XP_513679.2\| PREDICTED: hypothetical protein [Pan troglodytes]	755.0	[0..16]	[944..156]
AT1A1_HORSE - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Equus caballus GN=ATP1A1 PE=3 SV=1	748.0	[0..4]	[944..20]
AT1A3_CHICK - Sodium/potassium-transporting ATPase subunit alpha-3 OS=Gallus gallus GN=ATP1A3 PE=2 SV=1	748.0	[0..9]	[944..14]
gi\|358960 - gi\|358960\|prf\|\|1309271B ATPase alpha2,Na/K	747.0	[0..16]	[944..70]
ATP1A3 - ATPase, Na+/K+ transporting, alpha 3 polypeptide gi\|109124940 - gi\|109124940\|ref\|XP_001104119.1\| PREDICTED: similar to Na+/K+ -ATPase alpha 3 subunit [Macaca mulatt...	745.0	[0..16]	[944..24]
gi\|164382 - gi\|164382\|gb\|AAA31002.1\| Na+, K+-ATPase alpha-subunit precursor [Sus scrofa]	745.0	[0..9]	[944..25]
gi\|148692351, gi... - gi\|21450321\|ref\|NP_659170.1\| Na+/K+ -ATPase alpha 3 subunit [Mus musculus], gi\|18044918\|gb\|AAH20177....	745.0	[0..16]	[944..24]

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Predicted Domain #1

Region A:
Residues: [1-945]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKACCYFFIS MPPSASFQGQ PLITWHTLSA DQVVSDLHGD RQQGLSQQQV AENLQVYGKN  60
   61 ELIETGGRTS WNILVDQFTN IMLLLLIAVA VISAAIDIYQ AQQLGKFIFP KDAVAIFTVV 120
  121 LLNGILGYVQ ERGAEKALAA LKDLSTSRVR VIREGKTTEV ESTELVPGDL ILLEAGVKVP 180
  181 ADGRILEGAN LQIREAALTG EAEAVMKQGD VLLPADSALG DRLNLVYSGT EVVQGRGTVI 240
  241 VTATGMKTEL GKIASALQSV EPEPTPLQKR MTQLGNVLVS GSLILVAIVV VGGTLFKPDL 300
  301 FMQLVEVSLS MAVAVVPEGL PAVITVTLAL GTQRMAKRNA LIRQLSAVET LGSVTTICSD 360
  361 KTGTLTQNKM VVQSIISDRH RLVVTGEGYN PVGEFQAGEG EDLKIENIPE IEKLLMACIL 420
  421 CNDAILQKEN GQWAILGDPT EGALLALAGK ANIFKHEQEQ YFPRITEFPF SSERKRMSVI 480
  481 VQDGQGKINT PDSYVMFVKG SPELILERCT HIQVGSEILP ISKEKRSYIL EKNNDLAGRG 540
  541 LRVLGFASKV WTTLPANTTD DIAEQELTWL GLVGMLDAPR PEVRDAVAKC RAAGIRPVMI 600
  601 TGDHPLTAQA IALDLGIAEP GARVVTSRDL DNCSEKELAE IVHTVSVYAR VSPEHKLKIV 660
  661 QTLRKQHEVV AMTGDGVNDA PALKQADIGV AMGITGTDVS KEASDMILLD DNFATIVSAV 720
  721 EEGRVVYTNI RRFIRYILGS NIGEVLTIAA APLMGLGGVP LSPLQILWMN LVTDGVPALA 780
  781 LAVEPGKATV MQQSPKDPQE SIFARGLGSY MVRQGLILAI VTIVLMVWAY NYTPNHLEGG 840
  841 LSPNRWKTMV FTTLCLAQMG HALAIRSLTS LTVEMNLFSN PFLLVAVVVT SLLQLLLIYV 900
  901 EPLRAFFGTH YLPANELWVC VGFSALIFIW IELEKVSVRL YSSFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1iwoA
Description:	Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits