YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|628912
Organism:	Synechocystis sp.
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|628912.

Description	E-value	Query Range	Subject Range
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	151.0	[0..1]	[107..39]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	150.0	[0..1]	[107..39]
gi\|95928472, gi\|... - gi\|95928472\|ref\|ZP_01311219.1\| thioredoxin [Desulfuromonas acetoxidans DSM 684], gi\|95135262\|gb\|EAT1...	148.0	[0..3]	[107..5]
gi\|46133698 - gi\|46133698\|ref\|ZP_00203229.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Haemophilus infl... gi\|68056833, gi\|... - gi\|68248634\|ref\|YP_247746.1\| thioredoxin [Haemophilus influenzae 86-028NP], gi\|68056833\|gb\|AAX87086.... gi\|145642169, gi... - gi\|145642169\|ref\|ZP_01797738.1\| thioredoxin [Haemophilus influenzae R3021], gi\|145273160\|gb\|EDK13037... gi\|145642169 - gi\|145642169\|ref\|ZP_01797738.1\| thioredoxin [Haemophilus influenzae R3021] gi\|145639623, gi... - gi\|145639623\|ref\|ZP_01795226.1\| thioredoxin [Haemophilus influenzae PittII], gi\|145271180\|gb\|EDK1109... gi\|144978542, gi... - gi\|145629039\|ref\|ZP_01784838.1\| thioredoxin [Haemophilus influenzae 22.1-21], gi\|144978542\|gb\|EDJ882...	147.0	[0..1]	[107..1]
gi\|145636706, gi... - gi\|145636706\|ref\|ZP_01792372.1\| thioredoxin [Haemophilus influenzae PittHH], gi\|145270004\|gb\|EDK0994... gi\|42629265 - gi\|42629265\|ref\|ZP_00154813.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Haemophilus infl...	147.0	[0..1]	[107..1]
gi\|32029610, gi\|... - gi\|32029610\|ref\|ZP_00132604.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Haemophilus somn... gi\|113461487, gi... - gi\|53692484\|ref\|ZP_00122715.2\| COG0526: Thiol-disulfide isomerase and thioredoxins [Haemophilus somn...	147.0	[0..1]	[105..1]
THIO_HAEIN - Thioredoxin OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trxA PE=3 SV=1 THIO_HAEIN - Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3 SV=1	146.0	[0..1]	[107..1]
gi\|75428528, gi\|... - gi\|75428528\|ref\|ZP_00731730.1\| thiol-disulfide isomerase and thioredoxins [Actinobacillus succinogen...	146.0	[0..1]	[107..1]
gi\|25282775 - pir\|\|AD1813 thioredoxin [imported] - Nostoc sp. (strain PCC 7120) gi\|75702591, gi\|... - gi\|75908866\|ref\|YP_323162.1\| thioredoxin [Anabaena variabilis ATCC 29413], gi\|75702591\|gb\|ABA22267.1... gi\|7427614, gi\|1... - gi\|7427614\|pir\|\|TXAI thioredoxin 1 - Anabaena sp, gi\|142118\|gb\|AAA22049.1\| thioredoxin THIO1_NOSSO - Thioredoxin-1 OS=Nostoc sp. (strain ATCC 29151 / PCC 7119) GN=trxA PE=1 SV=2 THIO1_NOSS1 - Thioredoxin-1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trxA PE=3 SV=2	146.0	[0..1]	[107..1]
gi\|33566268 - gi\|33566268\|emb\|CAE37179.1\| thioredoxin 1 [Bordetella parapertussis] gi\|33596499 - gi\|33596499\|ref\|NP_884142.1\| thioredoxin 1 [Bordetella parapertussis 12822] gi\|33592390, gi\|... - gi\|33592390\|ref\|NP_880034.1\| thioredoxin 1 [Bordetella pertussis Tohama I], gi\|33572035\|emb\|CAE41559...	145.0	[0..1]	[107..34]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATPQVSDA SFKEDVLDSE LPVLVDFWAP WCGPCRMVAP VVDEISQQYE GKVKVVKLNT  60
   61 DENPNTASQY GIRSIPTLMI FKGGQRVDMV VGAVPKTTLA STLEKYL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.154902
Match:	2h71A
Description:	No description for 2h71A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits