YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1001778, gi\|1...
Organism:	Synechocystis sp. PCC 6803
Length:	527 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1001778, gi|1....

Description	E-value	Query Range	Subject Range
COBQ_NOSS1 - Cobyric acid synthase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=cobQ PE=3 SV=1 gi\|25327096 - pir\|\|AB2103 cobyric acid synthase [imported] - Nostoc sp. (strain PCC 7120)	350.0	[0..28]	[517..1]
COBQ_SYNE7 - Cobyric acid synthase OS=Synechococcus elongatus (strain PCC 7942) GN=cobQ PE=3 SV=1	348.0	[0..30]	[520..1]
COBQ_ANAVT - Cobyric acid synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=cobQ PE=3 SV=1	347.0	[0..30]	[517..1]
COBQ_SYNY3 - Cobyric acid synthase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=cobQ PE=3 SV=2 COBQ_SYNY3 - Cobyric acid synthase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=cobQ PE=3 SV=2	347.0	[0..30]	[527..1]
COBQ_SYNP6 - Cobyric acid synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cobQ PE=3...	346.0	[0..30]	[520..1]
COBQ_PSEAE - Cobyric acid synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228... COBQ_PSEAE - Cobyric acid synthase OS=Pseudomonas aeruginosa GN=cobQ PE=3 SV=1	335.0	[0..30]	[524..5]
gi\|84328213, gi\|... - gi\|84328213\|ref\|ZP_00976220.1\| COG1492: Cobyric acid synthase [Pseudomonas aeruginosa 2192], gi\|2542...	335.0	[0..30]	[524..5]
COBQ_PSEAB - Cobyric acid synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=cobQ PE=3 SV=1	334.0	[0..30]	[524..5]
gi\|107100728 - gi\|107100728\|ref\|ZP_01364646.1\| hypothetical protein PaerPA_01001755 [Pseudomonas aeruginosa PACS2]	333.0	[0..30]	[524..5]
COBQ_PSEU2 - Cobyric acid synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=cobQ PE=3 SV=1	332.0	[0..30]	[523..1]

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Predicted Domain #1

Region A:
Residues: [1-527]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPYSHRMEC PRSFVFLADS SIQSKQNLTM KAIMVVGTTS HAGKSFLTTG LCRLLRRRGD  60
   61 RVTPFKGQNM ALNAFVTIDG GEMGHAQAVQ AWAAGTVPRV AMNPILLKPQ GDMTSQVIML 120
  121 GQAVGTTRAQ EYYQNYFDRG WQAIANSLET LAQDFDVVVC EGAGSPAEIN LKHRDLTNMR 180
  181 VATHLQAATI LIADIDRGGV FAHVVGTLQL LEPEERKLIK GIVINKFRGQ RSLLDSGITW 240
  241 LEEYTGIPVL GVIPYGQNLF SAEDSLDILE RSGRPSKEDI RIVVLRLPRI ANFTDFEPLE 300
  301 AESGVYVDYL PLEKQLGNPD AVIIPGSKTT IADLQALQNS GMAQQIMDYA QAGGTVMGIC 360
  361 GGYQMLGQTI ADPENIEGNV SNCQGLGLLP LTTVINQEKI TRQCQTITHA PPSGLTVTGY 420
  421 EIHQGLSRRS EHSQDFLPMF DQEELGMVNA QQNLWGCYLH GLFDNGAWRR CWLNNLRQRR 480
  481 GLDPLPTSIG NYQEQREGML DSLADFVETH VNLEPILQSL PEENETP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1s1mA
Description:	Crystal Structure of E. Coli CTP Synthetase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits