YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7436727
Organism:	Synechocystis sp.
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7436727.

Description	E-value	Query Range	Subject Range
gi\|22298423, gi\|... - gi\|22298423\|ref\|NP_681670.1\| acetolactate synthase 3 regulatory subunit [Thermosynechococcus elongat...	249.0	[0..17]	[187..1]
gi\|23127611, gi\|... - gi\|23127611\|ref\|ZP_00109476.1\| COG0440: Acetolactate synthase, small (regulatory) subunit [Nostoc pu...	249.0	[0..17]	[187..1]
gi\|67921725, gi\|... - gi\|67921725\|ref\|ZP_00515242.1\| Acetolactate synthase, small subunit [Crocosphaera watsonii WH 8501],...	248.0	[0..17]	[187..1]
gi\|25291333 - pir\|\|AC2384 acetolactate synthase [imported] - Nostoc sp. (strain PCC 7120) gi\|17232119, gi\|... - gi\|17232119\|ref\|NP_488667.1\| acetolactate synthase 3 regulatory subunit [Nostoc sp. PCC 7120], gi\|17... gi\|75701981, gi\|... - gi\|75908256\|ref\|YP_322552.1\| acetolactate synthase 3 regulatory subunit [Anabaena variabilis ATCC 29...	248.0	[0..12]	[187..5]
ILVH_SYNY3 - Acetolactate synthase small subunit OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ilvH PE=3 SV=... ILVH_SYNY3 - Acetolactate synthase small subunit OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=ilv...	247.0	[0..17]	[188..1]
gi\|86556992, gi\|... - gi\|86608450\|ref\|YP_477212.1\| acetolactate synthase 3 regulatory subunit [Synechococcus sp. JA-2-3B'a... gi\|86608450 - gi\|86608450\|ref\|YP_477212.1\| acetolactate synthase, small subunit [Cyanobacteria bacterium Yellowsto...	247.0	[0..17]	[182..1]
gi\|86606770 - gi\|86606770\|ref\|YP_475533.1\| acetolactate synthase, small subunit [Cyanobacteria bacterium Yellowsto... gi\|86606770, gi\|... - gi\|86606770\|ref\|YP_475533.1\| acetolactate synthase 3 regulatory subunit [Synechococcus sp. JA-3-3Ab]...	242.0	[0..17]	[182..1]
gi\|33238229, gi\|... - gi\|33240701\|ref\|NP_875643.1\| acetolactate synthase 3 regulatory subunit [Prochlorococcus marinus sub...	238.0	[0..17]	[184..1]
gi\|45513843, gi\|... - gi\|81301243\|ref\|YP_401451.1\| acetolactate synthase 3 regulatory subunit [Synechococcus elongatus PCC... gi\|56751681, gi\|... - gi\|56751681\|ref\|YP_172382.1\| acetolactate synthase 3 regulatory subunit [Synechococcus elongatus PCC...	238.0	[0..17]	[187..1]
gi\|116066512, gi... - gi\|116071107\|ref\|ZP_01468376.1\| acetolactate synthase III small subunit [Synechococcus sp. BL107], g...	237.0	[0..17]	[182..1]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFYPNGHRR SPSLPPMKHT LSVLVEDEAG VLTRIAGLFA RRGFNIESLA VGSAEQGDVS  60
   61 RITMVVPGDE NTIEQLTKQL YKLVNVIKVQ DITETPCVER ELMLVKVSAN APNRAEVIEL 120
  121 AQVFRARIVD ISEDTVTIEV VGDPGKMVAI LQMLAKFGIK EVARTGKIAL VRESGVNTEY 180
  181 LKSLESKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.69897
Match:	2pc6A
Description:	No description for 2pc6A was found.

Predicted functions:

Term	Confidence	Notes
acetolactate synthase activity	14.1096734416761	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	12.4176994384119	bayes_pls_golite062009
catalytic activity	0.645256181736122	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: