YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7449469
Organism:	Synechocystis sp.
Length:	326 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7449469.

Description	E-value	Query Range	Subject Range
gi\|46130241, gi\|... - gi\|81300820\|ref\|YP_401028.1\| ribonuclease Z [Synechococcus elongatus PCC 7942], gi\|81169701\|gb\|ABB58... gi\|56752093, gi\|... - gi\|56752093\|ref\|YP_172794.1\| ribonuclease Z [Synechococcus elongatus PCC 6301], gi\|56687052\|dbj\|BAD8...	265.0	[0..1]	[326..1]
gi\|25323593 - pir\|\|AH2449 hypothetical protein alr5152 [imported] - Nostoc sp. (strain PCC 7120) RNZ_NOSS1 - Ribonuclease Z OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rnz PE=3 SV=1	256.0	[0..1]	[312..1]
RNZ_TRIEI - Ribonuclease Z OS=Trichodesmium erythraeum (strain IMS101) GN=rnz PE=3 SV=1	255.0	[0..1]	[309..1]
gi\|159889120, gi... - gi\|84517526\|ref\|ZP_01004875.1\| Metallo-beta-lactamase superfamily protein enzyme [Prochlorococcus ma...	254.0	[0..1]	[313..8]
RNZ_SYNS9 - Ribonuclease Z OS=Synechococcus sp. (strain CC9902) GN=rnz PE=3 SV=1	253.0	[0..1]	[310..1]
gi\|67924196, gi\|... - gi\|67924196\|ref\|ZP_00517637.1\| Beta-lactamase-like [Crocosphaera watsonii WH 8501], gi\|67853950\|gb\|E...	253.0	[0..1]	[316..1]
gi\|75908619, gi\|... - gi\|75908619\|ref\|YP_322915.1\| ribonuclease Z [Anabaena variabilis ATCC 29413], gi\|75702344\|gb\|ABA2202...	252.0	[0..2]	[312..25]
RNZ_SYNS3 - Ribonuclease Z OS=Synechococcus sp. (strain CC9311) GN=rnz PE=3 SV=1	251.0	[0..1]	[309..1]
gi\|116073639, gi... - gi\|116073639\|ref\|ZP_01470901.1\| Ribonuclease Z [Synechococcus sp. RS9916], gi\|116068944\|gb\|EAU74696....	250.0	[0..1]	[309..1]
RNZ_PROMM - Ribonuclease Z OS=Prochlorococcus marinus (strain MIT 9313) GN=rnz PE=3 SV=2	250.0	[0..1]	[310..1]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITFLGTSS GVPTRNRNVS SIALRLPQRA ELWLFDCGEG TQHQFLRSEV KISQLTRIFI  60
   61 THLHGDHIFG LMGLLASSGL AGSGQGIEIY GPEGLGDYLE ACCRFSSTHL GKRLKVHTVR 120
  121 ENGLIYEDKD FQVHCGLLKH RIPAYGYRVE EKQRPGRFNV EQAEALGIPF GPIYGQLKQG 180
  181 KTVTLEDGRR IRGQDLCEPP EPGRKFVYCT DTVFCEEAIA LAQEADLLVH EATFAHQDAQ 240
  241 LAFDRLHSTS TMAAQVALLA NVKQLIMTHF SPRYAPGNPL QLENLLAEAQ AIFPNTRLAR 300
  301 DFLTVEIPRR TADPAIAMST PQASPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.69897
Match:	1y44A
Description:	Crystal structure of RNase Z
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits