YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7429405
Organism:	Synechocystis sp.
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7429405.

Description	E-value	Query Range	Subject Range
Y2319_METFK - UPF0176 protein Mfla_2319 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=Mfla...	271.0	[0..2]	[274..3]
gi\|21886597 - gi\|21886597\|emb\|CAD42121.1\| hypothetical protein [Pseudomonas fluorescens]	271.0	[0..2]	[273..4]
Y522_HAHCH - UPF0176 protein HCH_00522 OS=Hahella chejuensis (strain KCTC 2396) GN=HCH_00522 PE=3 SV=1	271.0	[0..2]	[273..3]
Y1312_SACD2 - UPF0176 protein Sde_1312 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=Sde_1...	271.0	[0..2]	[271..3]
Y4325_PSEF5 - UPF0176 protein PFL_4325 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=PFL_4325 PE=3 SV...	270.0	[0..2]	[273..4]
Y2261_SHESA - UPF0176 protein Shewana3_2261 OS=Shewanella sp. (strain ANA-3) GN=Shewana3_2261 PE=3 SV=1	270.0	[0..2]	[273..3]
gi\|49085392 - gi\|49085392\|gb\|AAT51274.1\| PA0858 [synthetic construct]	269.0	[0..2]	[273..3]
Y4460_PSEA8 - UPF0176 protein PLES_44601 OS=Pseudomonas aeruginosa (strain LESB58) GN=PLES_44601 PE=3 SV=1 Y858_PSEAE - UPF0176 protein PA0858 OS=Pseudomonas aeruginosa GN=PA0858 PE=3 SV=1 gi\|107100315 - gi\|107100315\|ref\|ZP_01364233.1\| hypothetical protein PaerPA_01001340 [Pseudomonas aeruginosa PACS2] gi\|194550195, gi... - gi\|84316627\|ref\|ZP_00965099.1\| COG1054: Predicted sulfurtransferase [Pseudomonas aeruginosa C3719], ... gi\|254245144, gi... - gi\|84322666\|ref\|ZP_00970750.1\| COG1054: Predicted sulfurtransferase [Pseudomonas aeruginosa 2192], g... Y858_PSEAE - UPF0176 protein PA0858 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1222...	269.0	[0..2]	[273..3]
Y1760_SHESM - UPF0176 protein Shewmr4_1760 OS=Shewanella sp. (strain MR-4) GN=Shewmr4_1760 PE=3 SV=1	269.0	[0..2]	[273..3]
Y1781_SHELP - UPF0176 protein Shew_1781 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=Shew_1781 PE=3 SV=1	269.0	[0..2]	[273..3]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYQVTTFYH FTRLNCLAEK QSRWQELGDR LGLKGTILLA EEGVNATIAG ESAAIEEMVK  60
   61 IMAADLGLTS VPQRHSWAKT IPFQRMKVKI KPEIVSLGQP QVNPEKQVGT YVSPQQWNQL 120
  121 LQDPDVVVID TRNDYEVAIG TFQGAVNPCT KKFRQFPDYV KNNLDQQKNK KVAMFCTGGI 180
  181 RCEKASAYLL EEGFAEVYHL RGGILHYLET IAPEESLWQG ECFVFDERVA VQEGLKVGSH 240
  241 ALCDHCGYPL RVGDLAEIRY AVRHCPQCGL TVAVSNEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1uarA
Description:	Crystal structure of Rhodanese from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits