YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16331168, gi\|...
Organism:	Synechocystis sp. PCC 6803
Length:	398 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16331168, gi|....

Description	E-value	Query Range	Subject Range
Y1601_NOSS1 - Uncharacterized protein all1601 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all1601 PE=4 SV=2 gi\|25530610 - pir\|\|AC2006 hypothetical protein all1601 [imported] - Nostoc sp. (strain PCC 7120)	610.0	[0..1]	[397..1]
gi\|186685427, gi... - gi\|23127905\|ref\|ZP_00109764.1\| COG1035: Coenzyme F420-reducing hydrogenase, beta subunit [Nostoc pun...	607.0	[0..1]	[397..1]
gi\|75910412, gi\|... - gi\|75910412\|ref\|YP_324708.1\| coenzyme F420 hydrogenase/dehydrogenase beta subunit-like [Anabaena var...	607.0	[0..1]	[397..1]
gi\|22299388, gi\|... - gi\|22299388\|ref\|NP_682635.1\| hypothetical protein tll1845 [Thermosynechococcus elongatus BP-1], gi\|2...	605.0	[0..1]	[398..1]
gi\|56750204, gi\|... - gi\|56750204\|ref\|YP_170905.1\| hypothetical protein syc0195_d [Synechococcus elongatus PCC 6301], gi\|5... gi\|46129830, gi\|... - gi\|81300168\|ref\|YP_400376.1\| coenzyme F420 hydrogenase [Synechococcus elongatus PCC 7942], gi\|811690...	598.0	[0..1]	[397..1]
gi\|48892959, gi\|... - gi\|71676614\|ref\|ZP_00674355.1\| Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal:Coen...	587.0	[0..1]	[397..1]
gi\|67921512, gi\|... - gi\|67921512\|ref\|ZP_00515030.1\| Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal:Coen...	578.0	[0..4]	[398..10]
gi\|86554441, gi\|... - gi\|86605899\|ref\|YP_474662.1\| coenzyme F420 hydrogenase/dehydrogenase family protein [Cyanobacteria b... gi\|86554441, gi\|... - gi\|86605899\|ref\|YP_474662.1\| coenzyme F420 hydrogenase/dehydrogenase family protein [Synechococcus s...	538.0	[0..1]	[396..1]
gi\|86608737 - gi\|86608737\|ref\|YP_477499.1\| coenzyme F420 hydrogenase/dehydrogenase family protein [Cyanobacteria b... gi\|86557279, gi\|... - gi\|86608737\|ref\|YP_477499.1\| coenzyme F420 hydrogenase/dehydrogenase family protein [Synechococcus s...	533.0	[0..1]	[397..1]
gi\|35211441, gi\|... - gi\|37520447\|ref\|NP_923824.1\| hypothetical protein gll0878 [Gloeobacter violaceus PCC 7421], gi\|35211...	528.0	[0..14]	[396..8]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVPAPHQKA KGLKPGSPRP AKELCSDCGL CDTYYIHYVK EACAFINQQF DHLEEQTHGR  60
   61 SRELGKEDEV YFGVHQKMLT AQKKEPIPGA QWTGIVSTIG CEMLNKGLVE GVVCVQNTPE 120
  121 DRFQPQVVIA RTPAEVLAAK VNKPTLSPNL SVLEEVEKSG LKRLLVIGV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	35.886057
Match:	PF04422.4
Description:	No description for PF04422.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [170-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GCQIQALRAV EKQLGLEKLY VLGTPCVDNV SRAGLQKFLE TTSRSPETVV YYEFMQDFRV  60
   61 HFKHEDGSTE LVPFFGLKTN QLKEVFAPSC MSCFDYVNGL ADLVVGYMGA PFGWQWLVVR 120
  121 NQTGQEMLDL VQDQLHIGQV SSSGDRHQAV QQGITAYDKA VTLPMWVAKI MGLVIDKIGP 180
  181 TGLEYARFSI DSHFTRNYLY VKRNHPEKLA DHVPPFAKKI VEQYKLPQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	62.275724
Match:	PF04432.4
Description:	No description for PF04432.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits