YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1653500, gi\|1...
Organism:	Synechocystis sp. PCC 6803
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1653500, gi|1....

Description	E-value	Query Range	Subject Range
gi\|46135201, gi\|... - gi\|75910708\|ref\|YP_325004.1\| hemolysin A [Anabaena variabilis ATCC 29413], gi\|75704433\|gb\|ABA24109.1...	258.0	[0..4]	[274..1]
gi\|89099258, gi\|... - gi\|89099258\|ref\|ZP_01172136.1\| putative cell adhesion protein (contact hemolysin TlyA-related) [Baci...	252.0	[0..2]	[274..1]
gi\|83590353, gi\|... - gi\|83590353\|ref\|YP_430362.1\| hemolysin A [Moorella thermoacetica ATCC 39073], gi\|83573267\|gb\|ABC1981...	250.0	[0..4]	[272..1]
gi\|47076822 - gi\|47076822\|dbj\|BAD18362.1\| unknown conserved protein [Geobacillus kaustophilus] gi\|56380768, gi\|... - gi\|56420926\|ref\|YP_148244.1\| hypothetical protein GK2391 [Geobacillus kaustophilus HTA426], gi\|56380...	248.0	[0..2]	[273..1]
gi\|16410782, gi\|... - pir\|\|AF1245 conserved hypothetical protein lmo1366 [imported] - Listeria monocytogenes (strain EGD-e... gi\|224501691 - gi\|224501691\|ref\|ZP_03669998.1\| hypothetical protein LmonFR_04112 [Listeria monocytogenes FSL R2-561... gi\|254936367 - gi\|254936367\|ref\|ZP_05268064.1\| hypothetical protein LmonF6_04520 [Listeria monocytogenes F6900] gi\|126943378, gi... - gi\|254898469\|ref\|ZP_05258393.1\| hypothetical protein LmonJ_01600 [Listeria monocytogenes J0161], gi\|... gi\|153190762, gi... - gi\|254912040\|ref\|ZP_05262052.1\| hypothetical protein LmonJ2_04530 [Listeria monocytogenes J2818], gi... gi\|254827627, gi... - gi\|254827627\|ref\|ZP_05232314.1\| hypothetical protein LmonocytogeFSL_04135 [Listeria monocytogenes FS... gi\|47015695, gi\|... - gi\|47095949\|ref\|ZP_00233552.1\| hemolysin A [Listeria monocytogenes str. 1/2a F6854], gi\|47015695\|gb\|... gi\|16803406 - gi\|16803406\|ref\|NP_464891.1\| hypothetical protein lmo1366 [Listeria monocytogenes EGD-e]	248.0	[0..2]	[272..1]
gi\|186685337, gi... - gi\|53686799\|ref\|ZP_00106093.2\| COG1189: Predicted rRNA methylase [Nostoc punctiforme PCC 73102], gi\|...	247.0	[0..4]	[273..1]
gi\|254852586 - gi\|254852586\|ref\|ZP_05241934.1\| hypothetical protein LmonoFSL_04521 [Listeria monocytogenes FSL R2-5... gi\|254824575 - gi\|254824575\|ref\|ZP_05229576.1\| hypothetical protein LmonFS_05389 [Listeria monocytogenes FSL J1-194... gi\|254993061 - gi\|254993061\|ref\|ZP_05275251.1\| hypothetical protein LmonocytoFSL_08501 [Listeria monocytogenes FSL ... gi\|254880564 - gi\|254880564\|ref\|ZP_05253274.1\| hypothetical protein LmonFSL_15293 [Listeria monocytogenes FSL J2-07... gi\|153166753, gi... - gi\|153166753\|ref\|ZP_01927257.1\| hemolysin A [Listeria monocytogenes FSL N1-017], gi\|133727377\|gb\|EBA... gi\|153202205, gi... - gi\|254932319\|ref\|ZP_05265678.1\| hypothetical protein LmonH_07808 [Listeria monocytogenes HPB2262], g... gi\|46907592, gi\|... - gi\|46907592\|ref\|YP_013981.1\| hemolysin A [Listeria monocytogenes str. 4b F2365], gi\|46880860\|gb\|AAT0... gi\|47093753, gi\|... - gi\|47093753\|ref\|ZP_00231503.1\| hemolysin A [Listeria monocytogenes str. 4b H7858], gi\|47017874\|gb\|EA... gi\|225876429, gi... - gi\|226223967\|ref\|YP_002758074.1\| hypothetical protein Lm4b_01375 [Listeria monocytogenes Clip81459],...	246.0	[0..2]	[272..1]
gi\|196198081, gi... - gi\|196252472\|ref\|ZP_03151129.1\| hemolysin A [Clostridium thermocellum DSM 4150], gi\|196198081\|gb\|EDX... gi\|67875988, gi\|... - gi\|67875988\|ref\|ZP_00505046.1\| Hemolysin A [Clostridium thermocellum ATCC 27405], gi\|67850312\|gb\|EAM...	245.0	[0..4]	[272..1]
gi\|219539766, gi... - gi\|219669506\|ref\|YP_002459941.1\| hemolysin A [Desulfitobacterium hafniense DCB-2], gi\|219539766\|gb\|A...	245.0	[0..2]	[268..1]
gi\|78043160, gi\|... - gi\|78043160\|ref\|YP_360803.1\| hemolysin A [Carboxydothermus hydrogenoformans Z-2901], gi\|77995275\|gb\|...	245.0	[0..5]	[268..1]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKADKQRLD ALLVAKGLCE SRALAQRLIR AGEVKVNQQL VDKPGTLVTM DVAVELAQRP  60
   61 PYVSRGGEKL AKALTEFAID VTGRICLDGG ISTGGFTDCL LQRGATKVYG VDVGYGQVAW 120
  121 KLRQDDRVIL RERANFRYLT PQDLYGDQPW PDLGVMDLSF ISLTKVMAPL WSLLAPPREV 180
  181 VLLVKPQFEV GREKIGKKGV VRDAQAQAEA IDQVWRSGQS LGWQFNGLTF SPITGPAGNV 240
  241 EYLLWLSQSA VNASAPTLAQ LGEITQKTLD SFRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.69897
Match:	2as0A
Description:	Crystal Structure of PH1915 (APC 5817): A Hypothetical RNA Methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.857347609112816	bayes_pls_golite062009
transferase activity	0.769739415230943	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.648175251543522	bayes_pls_golite062009
methyltransferase activity	0.646052703874729	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.00827854656426392	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: