YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1653216, gi\|1...
Organism:	Synechocystis sp. PCC 6803
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1653216, gi|1....

Description	E-value	Query Range	Subject Range
gi\|45508872, gi\|... - gi\|75907371\|ref\|YP_321667.1\| glutaredoxin 2 [Anabaena variabilis ATCC 29413], gi\|75701096\|gb\|ABA2077...	112.0	[0..8]	[91..1]
gi\|17135484, gi\|... - gi\|17229156\|ref\|NP_485704.1\| hypothetical protein asl1664 [Nostoc sp. PCC 7120], gi\|17135484\|dbj\|BAB... gi\|25529839 - pir\|\|AB2014 hypothetical protein asl1664 [imported] - Nostoc sp. (strain PCC 7120)	110.0	[0..8]	[91..1]
gi\|67857542, gi\|... - gi\|67920058\|ref\|ZP_00513578.1\| Protein of unknown function DUF836 [Crocosphaera watsonii WH 8501], g...	109.0	[0..8]	[92..1]
gi\|186465247, gi... - gi\|23124940\|ref\|ZP_00106897.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Nostoc punctifor...	104.0	[0..8]	[91..1]
gi\|81300294, gi\|... - gi\|81300294\|ref\|YP_400502.1\| hypothetical protein Synpcc7942_1485 [Synechococcus elongatus PCC 7942]... gi\|56752480, gi\|... - gi\|56752480\|ref\|YP_173181.1\| hypothetical protein syc2471_c [Synechococcus elongatus PCC 6301], gi\|5...	102.0	[0..8]	[90..1]
gi\|86604789 - gi\|86604789\|ref\|YP_473552.1\| glutaredoxin family protein [Cyanobacteria bacterium Yellowstone A-Prim... gi\|86553331, gi\|... - gi\|86604789\|ref\|YP_473552.1\| glutaredoxin family protein [Synechococcus sp. JA-3-3Ab], gi\|86553331\|g...	99.0	[0..10]	[91..6]
gi\|22294132, gi\|... - gi\|22297954\|ref\|NP_681201.1\| hypothetical protein tsr0411 [Thermosynechococcus elongatus BP-1], gi\|2...	99.0	[0..7]	[93..1]
gi\|29831280, gi\|... - gi\|29831280\|ref\|NP_825914.1\| redoxin [Streptomyces avermitilis MA-4680], gi\|29608395\|dbj\|BAC72449.1\|...	96.0	[0..7]	[93..19]
gi\|86608658 - gi\|86608658\|ref\|YP_477420.1\| glutaredoxin family protein [Cyanobacteria bacterium Yellowstone B-Prim... gi\|86557200, gi\|... - gi\|86608658\|ref\|YP_477420.1\| glutaredoxin family protein [Synechococcus sp. JA-2-3B'a(2-13)], gi\|865...	94.0	[0..10]	[91..6]
gi\|14190427, gi\|... - gi\|18413101\|ref\|NP_567336.1\| unknown protein [Arabidopsis thaliana], gi\|15215897\|gb\|AAK91492.1\| AT4g...	93.0	[0..6]	[88..31]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNTENIMEL ILYSKPGCHL CEGLMEKLAQ INSLTIELEV RDITTDEQWW AAYQYEIPVL  60
   61 VWRSPTGEIT LPRLSPRAPV SQLEKLLQQY VNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.221849
Match:	1xpvA
Description:	Solution Structure of Northeast Structural Genomics Target Protein XcR50 from X. Campestris
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits