YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1652873, gi\|1...
Organism:	Synechocystis sp. PCC 6803
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1652873, gi|1....

Description	E-value	Query Range	Subject Range
gi\|48855976 - gi\|48855976\|ref\|ZP_00310134.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|110636965, gi... - gi\|110636965\|ref\|YP_677172.1\| hypothetical protein CHU_0545 [Cytophaga hutchinsonii ATCC 33406], gi\|...	166.0	[0..17]	[192..3]
gi\|37528606, gi\|... - gi\|37528606\|ref\|NP_931951.1\| periplasmic protein precursor [Photorhabdus luminescens subsp. laumondi...	134.0	[0..24]	[188..1]
gi\|82776812, gi\|... - gi\|82776812\|ref\|YP_403161.1\| periplasmic protein [Shigella dysenteriae Sd197], gi\|81240960\|gb\|ABB616...	121.0	[0..30]	[193..1]
gi\|25502167 - pir\|\|B95967 hypothetical membrane-anchored protein [imported] - Sinorhizobium meliloti (strain 1021)... gi\|15140888, gi\|... - gi\|16264750\|ref\|NP_437542.1\| hypothetical protein SM_b21562 [Sinorhizobium meliloti 1021], gi\|151408...	119.0	[0..68]	[188..61]
gi\|21647290, gi\|... - gi\|21674132\|ref\|NP_662197.1\| hypothetical protein CT1309 [Chlorobium tepidum TLS], gi\|21647290\|gb\|AA...	115.0	[0..29]	[190..1]
gi\|28899631, gi\|... - gi\|28899631\|ref\|NP_799236.1\| periplasmic repressor CpxP [Vibrio parahaemolyticus RIMD 2210633], gi\|2... gi\|28807883 - gi\|28807883\|dbj\|BAC61120.1\| putative periplasmic protein CpxP [Vibrio parahaemolyticus RIMD 2210633]	115.0	[0..30]	[190..4]
gi\|75176701 - gi\|75176701\|ref\|ZP_00696829.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito...	112.0	[0..30]	[189..1]
gi\|82406376, gi\|... - gi\|82495492\|ref\|ZP_00881067.1\| spheroplast protein y precursor, putative [Shewanella sp. MR-4], gi\|8...	112.0	[0..29]	[188..1]
gi\|117623915, gi... - gi\|117623915\|ref\|YP_852828.1\| periplasmic protein [Escherichia coli APEC O1], gi\|115513039\|gb\|ABJ011... gi\|91210959, gi\|... - gi\|91210959\|ref\|YP_540945.1\| periplasmic protein [Escherichia coli UTI89], gi\|91072533\|gb\|ABE07414.1... gi\|218558611, gi... - gi\|218558611\|ref\|YP_002391524.1\| periplasmic protein [Escherichia coli S88], gi\|218365380\|emb\|CAR031... gi\|237705693, gi... - gi\|237705693\|ref\|ZP_04536174.1\| spheroplast protein Y [Escherichia sp. 3_2_53FAA], gi\|226900450\|gb\|E...	111.0	[0..30]	[193..1]
gi\|83569820 - gi\|83569820\|ref\|ZP_00921269.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito...	111.0	[0..30]	[189..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTKRSPTGI RQFVLFNHFS VNFLRNLLIM KNIIIAGLLS GLACTVSTMP AMAQNQNLDL  60
   61 HWQSGDTSEQ MLAQWGWGNK KGGQGQWMES LDLTDSQKQQ LEAIRQKYQG QMQSLSEQMR 120
  121 TSQNELRTLM SGNGSDSEIR AKHNQVANLR QQLGELRFNS MLESRQVLTP EQRQKFSQLM 180
  181 QERRNSRQGR RGMGNQQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.784	a.47.2	t-snare proteins
View	Download	0.760	a.24.9	alpha-catenin/vinculin
View	Download	0.689	a.24.9	alpha-catenin/vinculin
View	Download	0.637	a.7.1	Spectrin repeat
View	Download	0.620	f.13.1	Family A G protein-coupled receptor-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits