YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1652666, gi\|1...
Organism:	Synechocystis sp. PCC 6803
Length:	855 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1652666, gi|1....

Description	E-value	Query Range	Subject Range
gi\|22298324, gi\|... - gi\|22298324\|ref\|NP_681571.1\| glycogen phosphorylase [Thermosynechococcus elongatus BP-1], gi\|2229450...	1241.0	[0..26]	[852..28]
gi\|67856363, gi\|... - gi\|67921771\|ref\|ZP_00515288.1\| Phosphorylase [Crocosphaera watsonii WH 8501], gi\|67856363\|gb\|EAM5160...	1229.0	[0..12]	[854..2]
gi\|114681358 - gi\|114681358\|ref\|XP_525293.2\| PREDICTED: brain glycogen phosphorylase [Pan troglodytes]	1225.0	[0..14]	[846..165]
gi\|35211561, gi\|... - gi\|37520567\|ref\|NP_923944.1\| glycogen phosphorylase [Gloeobacter violaceus PCC 7421], gi\|35211561\|db...	1222.0	[0..15]	[855..7]
gi\|109093168 - gi\|109093168\|ref\|XP_001100456.1\| PREDICTED: brain glycogen phosphorylase isoform 3 [Macaca mulatta]	1220.0	[0..14]	[855..1]
gi\|50054411, gi\|... - gi\|50054411\|ref\|NP_001001904.1\| brain glycogen phosphorylase [Xenopus (Silurana) tropicalis], gi\|463...	1218.0	[0..14]	[846..1]
gi\|147898991, gi... - gi\|47940264\|gb\|AAH72163.1\| MGC80198 protein [Xenopus laevis], gi\|147898991\|ref\|NP_001085064.1\| hypot...	1216.0	[0..14]	[846..1]

Back

Predicted Domain #1

Region A:
Residues: [1-855]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSPRLFHQE QSMIDQSTLN TSPQPTITIE DDRTGMSVAT LKRAFLDNLF YLQGIDRSQA  60
   61 TLYDYYVALA YTIRDRLLHR FIKTVATYKQ EKVKVVCYLS AEFLMGRHLG NNLINLGLYD 120
  121 KIDQVMKEFD LDLNEIIEQE PDPGLGNGGL GRLAACFLDS LASLEVPAIG YGIRYEFGIF 180
  181 HQRIQDGWQV EVPDNWLRFG NPWEIPRADE SVEVKLGGHT EIIHNEKNQP KVVWIPERTI 240
  241 LAIPYDTPVP GYQTNTVNPL RLWKAEASEE FNFEAFNSGL YDRAVAEKMD AETISKVLYP 300
  301 NDNTPAGREL RLAQQYFFVS ASLQDLIRIH LRTHPNLDTF YELTAIQLND THPAVAIAEL 360
  361 MRLFVDRYDY DWDKAWDITQ KTFAYTNHTL MPEALERWSV DLFAKLLPRH LEIIYEINHR 420
  421 FLTGLQTWFP NDEALVESLS LIEENHGKKI RMANLACVGS HAINGVAALH TELLKKDTLR 480
  481 DFAKLWPQKF FNKTNGVTPR RWILLSNPEL SALVTEKIGD GWLKNLDEMR QIEKFVDDPE 540
  541 FCRRWREIKQ NNKRNLAAYL LKYRNVQIDV NSLFDVQVKR IHEYKRQHLA ALEIIHLYNR 600
  601 IKQNPHAEIV PRTFIFGGKA APGYFMAKLI IKLINAVGEV VNNDPDVRGR LKVVFVSNFN 660
  661 VSLGQRIYPA ADLSEQISTA GKEASGTGNM KFAMNGALTI GTLDGANIEI REEAGPENFF 720
  721 LFGLTAEQVY AMKENGYHPH TYYDNNFDLK AVIDRIAHGY FSPGNPNLFH PIVESLLHHD 780
  781 PYMLLADYQA YVGCQDEVSK AYADQDRWTK MSILNSARMG KFSSDRTIRE YCKEIWDVPP 840
  841 VKISLDEYHP EYADL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1z8dA
Description:	No description for 1z8dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits