YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7440987
Organism:	Synechocystis sp.
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7440987.

Description	E-value	Query Range	Subject Range
gi\|114145792, gi... - gi\|32527737\|gb\|AAP86270.1\| Ac2-210 [Rattus norvegicus], gi\|114145792\|ref\|NP_001041363.1\| Ribosomal_L...	179.0	[0..3]	[118..8]
gi\|73962156 - gi\|73962156\|ref\|XP_850345.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 3 [Canis ...	179.0	[0..3]	[118..8]
gi\|114673108, gi... - gi\|114673108\|ref\|XP_001152407.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|114...	178.0	[0..3]	[118..8]
gi\|55824570 - gi\|55824570\|gb\|AAV66405.1\| ribosomal protein L17 [Macaca fascicularis]	173.0	[0..3]	[118..4]
gi\|76649602 - gi\|76649602\|ref\|XP_874889.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) (Amino acid starv...	173.0	[0..3]	[118..8]
gi\|31324951 - gi\|31324951\|gb\|AAH52940.1\| Rpl17 protein [Mus musculus] gi\|109122149, gi... - gi\|109122151\|ref\|XP_001089275.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 5 [Ma... gi\|114692313, gi... - gi\|55627436\|ref\|XP_518757.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|1146923... gi\|73962160, gi\|... - gi\|73962164\|ref\|XP_861376.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 10 [Canis... RPL17 - ribosomal protein L17 ENSCJAT000000092... - null, null gi\|123982774, gi... - gi\|123997445\|gb\|ABM86324.1\| ribosomal protein L17 [synthetic construct], gi\|123982774\|gb\|ABM83128.1\|... RL17_FELCA - 60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3	171.0	[0..3]	[118..8]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKLDTTAEV KAIARYVRMS PLKVRRVLDQ IRGRSYREAL IILEFMPYKA CEPVLKVLRS  60
   61 AVANAEHNEG LEPADLVVSQ AFADGGPSLR RFRPRAQGRA YQIRKPTCHI TVAVAPALAD 120
  121 N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.30103
Match:	1bxeA
Description:	Ribosomal protein L22
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits