YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7440830
Organism:	Synechocystis sp.
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7440830.

Description	E-value	Query Range	Subject Range
gi\|83720943, gi\|... - gi\|83720943\|ref\|YP_443562.1\| ribosomal protein L14 [Burkholderia thailandensis E264], gi\|83654768\|gb...	203.0	[0..1]	[122..61]
RL14_SYMTH - 50S ribosomal protein L14 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=rplN PE=3 SV=1 RL14_SYMTH - 50S ribosomal protein L14 OS=Symbiobacterium thermophilum GN=rplN PE=3 SV=1	202.0	[0..1]	[122..1]
gi\|105894482, gi... - gi\|107024293\|ref\|YP_622620.1\| ribosomal protein L14 [Burkholderia cenocepacia AU 1054], gi\|105894482...	202.0	[0..1]	[122..58]
gi\|76809421, gi\|... - gi\|76809421\|ref\|YP_335130.1\| 50S ribosomal protein L14 [Burkholderia pseudomallei 1710b], gi\|7657887...	200.0	[0..1]	[122..41]
RL14_THEEB - 50S ribosomal protein L14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplN PE=3 SV=1 RL14_SYNEL - 50S ribosomal protein L14 OS=Synechococcus elongatus GN=rplN PE=3 SV=1	199.0	[0..1]	[122..1]
gi\|241907011, gi... - gi\|241907011\|ref\|ZP_04791592.1\| ribosomal protein L14 [Desulfovibrio vulgaris RCH1], gi\|241880824\|gb... RL14_DESVH - 50S ribosomal protein L14 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)... RL14_DESVV - 50S ribosomal protein L14 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplN PE=3 SV=1	199.0	[0..1]	[122..1]
RL14_XANAC - 50S ribosomal protein L14 OS=Xanthomonas axonopodis pv. citri (strain 306) GN=rplN PE=3 SV=1 RL14_XANCP - 50S ribosomal protein L14 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / N... RL14_XANCP - 50S ribosomal protein L14 OS=Xanthomonas campestris pv. campestris GN=rplN PE=3 SV=1 RL14_XANC5 - 50S ribosomal protein L14 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rplN PE=3 SV=1 RL14_XANCB - 50S ribosomal protein L14 OS=Xanthomonas campestris pv. campestris (strain B100) GN=rplN PE=3 SV=1 RL14_XANC8 - 50S ribosomal protein L14 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rplN PE=3 SV=1 RL14_XANAC - 50S ribosomal protein L14 OS=Xanthomonas axonopodis pv. citri GN=rplN PE=3 SV=1	198.0	[0..1]	[122..1]
RK14_PHYPA - 50S ribosomal protein L14, chloroplastic OS=Physcomitrella patens subsp. patens GN=rpl14 PE=3 SV=1 RK14_PHYPA - 50S ribosomal protein L14, chloroplastic OS=Physcomitrella patens subsp. patens GN=rpl14 PE=3 SV=1	198.0	[0..1]	[122..1]
gi\|89516786, gi\|... - gi\|89891142\|ref\|ZP_01202650.1\| 50S ribosomal protein L14 RplN [Flavobacteria bacterium BBFL7], gi\|89...	198.0	[0..1]	[122..1]
RL14_RUBXD - 50S ribosomal protein L14 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplN PE=3 SV...	197.0	[0..1]	[122..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQQQTYLNV ADNSGARKLM CLRVLGTGNC TYGGIGDQII AVVKDALPNM PIKKSDVVRA  60
   61 VIVRTKQPLR RASGMSIRFD DNAAVIINAE GNPRGTRVFG PVARELRDKN FTKIVSLAPE 120
  121 VL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	1vsaI
Description:	No description for 1vsaI was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0077098174023	bayes_pls_golite062009
structural molecule activity	9.43117206427219	bayes_pls_golite062009
binding	1.19249144486008	bayes_pls_golite062009
protein binding	0.555364167462951	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: