YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7450861
Organism:	Synechocystis sp.
Length:	566 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7450861.

Description	E-value	Query Range	Subject Range
gi\|186465550, gi... - gi\|23129126\|ref\|ZP_00110959.1\| COG0661: Predicted unusual protein kinase [Nostoc punctiforme PCC 731...	419.0	[0..10]	[565..3]
gi\|110167178, gi... - gi\|71675007\|ref\|ZP_00672753.1\| ABC-1 [Trichodesmium erythraeum IMS101], gi\|71671983\|gb\|EAO28647.1\| A...	412.0	[0..14]	[564..7]
gi\|53764046, gi\|... - gi\|75906543\|ref\|YP_320839.1\| hypothetical protein Ava_0318 [Anabaena variabilis ATCC 29413], gi\|7570...	410.0	[0..10]	[565..23]
gi\|45527769, gi\|... - gi\|67921168\|ref\|ZP_00514687.1\| ABC-1 [Crocosphaera watsonii WH 8501], gi\|67857285\|gb\|EAM52525.1\| ABC...	408.0	[0..6]	[565..8]
gi\|17129937, gi\|... - gi\|17228088\|ref\|NP_484636.1\| hypothetical protein all0592 [Nostoc sp. PCC 7120], gi\|17129937\|dbj\|BAB... gi\|25329175 - pir\|\|AG1880 hypothetical protein all0592 [imported] - Nostoc sp. (strain PCC 7120)	407.0	[0..10]	[565..3]
gi\|22295385, gi\|... - gi\|22299203\|ref\|NP_682450.1\| hypothetical protein tlr1660 [Thermosynechococcus elongatus BP-1], gi\|2...	387.0	[0..1]	[553..5]
gi\|81299519, gi\|... - gi\|81299519\|ref\|YP_399727.1\| hypothetical protein Synpcc7942_0708 [Synechococcus elongatus PCC 7942]... gi\|56750831, gi\|... - gi\|56750831\|ref\|YP_171532.1\| hypothetical protein syc0822_c [Synechococcus elongatus PCC 6301], gi\|5...	382.0	[0..3]	[564..11]
gi\|35214987, gi\|... - gi\|37523981\|ref\|NP_927358.1\| hypothetical protein gll4412 [Gloeobacter violaceus PCC 7421], gi\|35214...	382.0	[0..5]	[561..1]
gi\|46130086, gi\|... - gi\|81300587\|ref\|YP_400795.1\| hypothetical protein Synpcc7942_1778 [Synechococcus elongatus PCC 7942]...	369.0	[0..19]	[566..19]

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Predicted Domain #1

Region A:
Residues: [1-451]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNPKPLPPQ SELDNIRRYN AQAIANYYRR RPWKVLWRAL EVVWSFGFFL TCLLWDQWTG  60
   61 QVEYYKRQRA EDLRELLTKL GPTFIKVGQA LSTRPDLVRR DFLEELIKLQ DQLPPFDNDL 120
  121 AFQLMEEQLG MKVDEAYREI SAHPVAAASL GQVYRAMLFS GEEVAVKVQR PNLRPRLSLD 180
  181 LYLMRLGAQK FGRFLPLNLG HDLTLIVDEF GIKLFEEIDY LNEGRNAEKF AENFHGDAEV 240
  241 KVPCIYWQYS NQKVLTLEWI QGFKLTDTDK IRAAGLDPSD IIRIGVTSGL RQLLEHGFFH 300
  301 ADPHPGNLFA TLDGRMAYID FGMMDQLEPG TKETIASSIV QLINKDYLAL TEDFIALGFL 360
  361 APNTDITPII PALENVFGSA IGQSVQDFNF KTITDDFSEL MYDYPFRVPA KFALIIRSLV 420
  421 TQEGLALSLD PNFKIVEVAY PYVARRLLTG E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	2fo0A
Description:	No description for 2fo0A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.686492203566958	bayes_pls_golite062009
transferase activity	0.66841261245817	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.66326000691279	bayes_pls_golite062009
kinase activity	0.65753777854807	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.64444215862273	bayes_pls_golite062009
protein kinase activity	0.56587465829201	bayes_pls_golite062009
binding	0.0554152720226	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [452-566]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPQLRRQLID VLFKNGKFQW QRLENMLSIA RSDTKFDLLP TAQLGLQFLF SEEGLYLRRQ  60
   61 ILLALTEDDR LHTDEVQRIW GLVKDDFKPQ ELVNVAWNAV REFSLAGVST ILPQR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: