YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1652105, gi\|1...
Organism:	Synechocystis sp. PCC 6803
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1652105, gi|1....

Description	E-value	Query Range	Subject Range
gi\|7542514, gi\|1... - gi\|7542516\|gb\|AAF63480.1\|AF237945_1 HCF106C precursor protein [Zea mays], gi\|7542514\|gb\|AAF63479.1\|A...	101.0	[0..8]	[124..30]
gi\|32307512 - gi\|32307512\|gb\|AAP79161.1\| Tha4 plastid transport protein [Bigelowiella natans]	93.0	[0..16]	[121..91]
gi\|75704371, gi\|... - gi\|75910646\|ref\|YP_324942.1\| Sec-independent protein translocase TatA [Anabaena variabilis ATCC 2941...	93.0	[0..42]	[125..1]
TATA_TRIEI - Sec-independent protein translocase protein TatA OS=Trichodesmium erythraeum (strain IMS101) GN=tatA...	93.0	[0..42]	[122..1]
gi\|186466890, gi... - gi\|23129516\|ref\|ZP_00111343.1\| COG1826: Sec-independent protein secretion pathway components [Nostoc...	92.0	[0..42]	[126..1]
gi\|67923730, gi\|... - gi\|67923730\|ref\|ZP_00517196.1\| Twin-arginine translocation protein TatA/E [Crocosphaera watsonii WH ...	92.0	[0..42]	[126..1]
gi\|25530529 - pir\|\|AC1912 hypothetical protein asl0845 [imported] - Nostoc sp. (strain PCC 7120) gi\|17228340, gi\|... - gi\|17228340\|ref\|NP_484888.1\| hypothetical protein asl0845 [Nostoc sp. PCC 7120], gi\|17130190\|dbj\|BAB...	91.0	[0..42]	[125..1]
TATB_ARATH - Sec-independent protein translocase protein TATB, chloroplastic OS=Arabidopsis thaliana GN=TATB PE=1...	91.0	[0..12]	[108..52]
gi\|44662991 - gi\|44662991\|gb\|AAS47586.1\| chloroplast Tha4-1 [Physcomitrella patens]	90.0	[0..29]	[123..68]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTLVMGAI ASPWVSVGTK LCYSRLNESF YPSNPLTAPN PMNIFGIGLP ELGLIFVIAL  60
   61 LVFGPKKLPE VGRSLGKALR GFQEASKEFE TELKREAQNL EKSVQIKAEL EESKTPESSS 120
  121 SSEKAS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.79588
Match:	PF02416.7
Description:	No description for PF02416.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits