YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7427960
Organism:	Synechocystis sp.
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7427960.

Description	E-value	Query Range	Subject Range
gi\|23130348 - gi\|23130348\|ref\|ZP_00112165.1\| COG0352: Thiamine monophosphate synthase [Nostoc punctiforme PCC 7310...	340.0	[0..3]	[343..29]
THIE_NOSS1 - Thiamine-phosphate synthase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=thiE PE=3 SV=2	328.0	[0..2]	[343..8]
gi\|75911243, gi\|... - gi\|75911243\|ref\|YP_325539.1\| thiamine-phosphate pyrophosphorylase [Anabaena variabilis ATCC 29413], ...	323.0	[0..2]	[343..36]
gi\|48891748, gi\|... - gi\|71674938\|ref\|ZP_00672684.1\| Thiamine monophosphate synthase [Trichodesmium erythraeum IMS101], gi...	323.0	[0..1]	[341..7]
gi\|67922607, gi\|... - gi\|67922607\|ref\|ZP_00516113.1\| Thiamine monophosphate synthase [Crocosphaera watsonii WH 8501], gi\|6...	321.0	[0..7]	[339..5]
THIE_THEEB - Thiamine-phosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=thiE PE=3 SV=2 THIE_SYNEL - Thiamine-phosphate pyrophosphorylase OS=Synechococcus elongatus GN=thiE PE=3 SV=2	299.0	[0..4]	[343..8]
gi\|22295673, gi\|... - gi\|22299490\|ref\|NP_682737.1\| thiamine-phosphate pyrophosphorylase [Thermosynechococcus elongatus BP-...	299.0	[0..4]	[343..14]
gi\|81299866, gi\|... - gi\|81299866\|ref\|YP_400074.1\| thiamine-phosphate pyrophosphorylase [Synechococcus elongatus PCC 7942]...	298.0	[0..5]	[338..10]
gi\|56685459, gi\|... - gi\|56750500\|ref\|YP_171201.1\| thiamine-phosphate pyrophosphorylase [Synechococcus elongatus PCC 6301]...	298.0	[0..5]	[338..10]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQASPTAIA RILDANLNRA REGLRTVEEW CRFALENREL AEECKQLRQA LAPWHQDDLR  60
   61 AARDTPNDVG TQLTHAQEAL RTDVRALLQA NLCRVEEALR VLEEYGKLRD PAMGACCKQL 120
  121 RYRVYALESG L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.800	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.799	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.796	N/A	N/A	a.24.18	Description not found.
View	Download	0.792	N/A	N/A	a.24.3	Cytochromes
View	Download	0.783	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.764	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.759	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.646	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore

Predicted Domain #2

Region A:
Residues: [132-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGSKLVQRLQ QCSLYLVTSP QENLLATVEA ALQGGLKLVQ YRDKDAEDQL RWQRAKDLRE  60
   61 LCRQYEALFL VNDRVDLALA VDADGVHLGQ QDLPIAVARQ LLGPDKIIGR STTNPEEMAK 120
  121 AIAEGADYIG VGPVYATPTK AGKKPAGLEY VQYAVTNSPV PWFAIGGIDG ENLGEVMEAG 180
  181 ATQVAIVRAI METTNPTQAT AQLLTQLSRI NP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.522879
Match:	1xi3A
Description:	Thiamine phosphate pyrophosphorylase from Pyrococcus furiosus Pfu-1255191-001
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits