YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1652037, gi\|1...
Organism:	Synechocystis sp. PCC 6803
Length:	433 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1652037, gi|1....

Description	E-value	Query Range	Subject Range
gi\|46136511, gi\|... - gi\|46136511\|ref\|XP_389947.1\| hypothetical protein FG09771.1 [Gibberella zeae PH-1], gi\|42553297\|gb\|E...	248.0	[0..72]	[383..203]
gi\|67086540, gi\|... - gi\|67156210\|ref\|ZP_00417836.1\| K+-dependent Na+/Ca+ exchanger related-protein [Azotobacter vinelandi... gi\|53611245, gi\|... - gi\|67156210\|ref\|ZP_00417836.1\| K+-dependent Na+/Ca+ exchanger related-protein [Azotobacter vinelandi...	222.0	[0..70]	[427..4]
gi\|33634658, gi\|... - gi\|33862742\|ref\|NP_894302.1\| CaCA family, sodium/calcium exchanger [Prochlorococcus marinus str. MIT...	222.0	[0..69]	[430..5]
gi\|67922821, gi\|... - gi\|67922821\|ref\|ZP_00516320.1\| K+-dependent Na+/Ca+ exchanger related-protein [Crocosphaera watsonii...	220.0	[0..66]	[429..1]
CAX5_ARATH - Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1	220.0	[0..13]	[397..29]
gi\|34558449 - gi\|34558449\|ref\|NP_908264.1\| hypothetical protein WS2173 [Wolinella succinogenes DSM 1740] gi\|34484168 - gi\|34484168\|emb\|CAE11164.1\| conserved hypothetical protein [Wolinella succinogenes]	217.0	[0..86]	[429..19]
gi\|111057198 - gi\|111057198\|gb\|EAT78318.1\| hypothetical protein SNOG_14447 [Phaeosphaeria nodorum SN15]	214.0	[0..50]	[388..295]
gi\|106770733, gi... - gi\|148655268\|ref\|YP_001275473.1\| CaCA family Na(+)/Ca(+) antiporter [Roseiflexus sp. RS-1], gi\|14856...	213.0	[0..69]	[424..3]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCSIVTAIF KPKKPSCLPP CRNQILAMAT PNRPLINFSV RSSGFTFGPY KRQVRFFHLG  60
   61 LLRANMMTWL TIPFLILGLG ILVAGAEILV KGASRIALMA GLSPLIIGLT IVAYGTSMPE 120
  121 MVVSLQAAIA GQADISIGNV VGSNIFNVLL ILGVCSIITP LIVAQQLIRL DIPILIGVSG 180
  181 LLLMFGWDGQ ISRVDGVILA SGAILYTTFL IRQSKKENNP DVTEE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.823909
Match:	PF01699.15
Description:	No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [226-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLKEFGEPVP KTGKQIFIQI AYVVGGVALL VLGSSLLVKS SVAIAKSLGI SELVIGLTLI  60
   61 AAGTSLPELA TSVVASYRGE RDIAVGNVVG SNIFNILAVL GFAAIFSPNG IQVSNSAFNF 120
  121 DIPVMFAVAL VCLPVFITGR LIDRWEGFLF LFYYIAYTAY LVLDATHNQN LHIFNNVILF 180
  181 VVIPATAIAL GLSLIPDLVR GKKNDTGI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	46.657577
Match:	PF01699.15
Description:	No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits