YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34396477, gi\|...
Organism:	Porphyromonas gingivalis W83
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34396477, gi|....

Description	E-value	Query Range	Subject Range
gi\|20515438, gi\|... - gi\|20806959\|ref\|NP_622130.1\| glutamate formiminotransferase [Thermoanaerobacter tengcongensis MB4], ... gi\|20806959 - gi\|20806959\|ref\|NP_622130.1\| Glutamate formiminotransferase [Thermoanaerobacter tengcongensis MB4]	501.0	[0..3]	[300..1]
gi\|242256226, gi... - gi\|242256226\|ref\|ZP_04801121.1\| glutamate formiminotransferase [Thermoanaerobacter sp. X513], gi\|242... gi\|114844566, gi... - gi\|167039053\|ref\|YP_001662038.1\| glutamate formiminotransferase [Thermoanaerobacter sp. X514], gi\|16...	494.0	[0..3]	[300..1]
gi\|42525812, gi\|... - gi\|42525812\|ref\|NP_970910.1\| formiminotransferase, putative [Treponema denticola ATCC 35405], gi\|418...	493.0	[0..3]	[300..2]
gi\|76797052, gi\|... - gi\|76797052\|ref\|ZP_00779395.1\| Formiminotransferase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|... gi\|241904616, gi... - gi\|241904616\|ref\|ZP_04789298.1\| glutamate formiminotransferase [Thermoanaerobacter brockii subsp. fi...	491.0	[0..3]	[300..1]
gi\|29340005, gi\|... - gi\|29348102\|ref\|NP_811605.1\| formiminotransferase-cyclodeaminase [Bacteroides thetaiotaomicron VPI-5... gi\|251841645, gi... - gi\|253569626\|ref\|ZP_04847036.1\| formiminotransferase-cyclodeaminase [Bacteroides sp. 1_1_6], gi\|2518...	491.0	[0..1]	[300..1]
gi\|28204345, gi\|... - gi\|28211902\|ref\|NP_782846.1\| glutamate formiminotransferase [Clostridium tetani E88], gi\|28204345\|gb...	486.0	[0..3]	[300..1]
gi\|71911585, gi\|... - gi\|71911585\|ref\|YP_283135.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS5005], gi\|71... gi\|15675841, gi\|... - gi\|15675841\|ref\|NP_270015.1\| glutamate formiminotransferase [Streptococcus pyogenes M1 GAS], gi\|1362... GLFT_STRP1 - Glutamate formimidoyltransferase OS=Streptococcus pyogenes serotype M1 GN=M5005_Spy1772 PE=1 SV=1	485.0	[0..3]	[299..1]
gi\|94989413, gi\|... - gi\|94989413\|ref\|YP_597514.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS9429], gi\|94... gi\|94546810, gi\|... - gi\|94993302\|ref\|YP_601401.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS2096], gi\|94...	484.0	[0..3]	[299..1]
gi\|94995260, gi\|... - gi\|94995260\|ref\|YP_603358.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS10750], gi\|9...	484.0	[0..3]	[299..1]
gi\|50904189, gi\|... - gi\|50915115\|ref\|YP_061087.1\| glutamate formiminotransferase [Streptococcus pyogenes MGAS10394], gi\|5...	484.0	[0..3]	[299..1]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSRIMECV PNFSEGRDKE KIEKIVNPFR TREGVKLLNY SNDEDHNRLV VTVVGEPEPL  60
   61 REAVLEAVGI AVELIDLTKH TGQHPRMGAV DVIPFIPIKN VTAEDADTLA KEVGRTIGEK 120
  121 YGVPVFLYEK SATAPHRENL AKIRKGEFEG MAEKIHEADW HPDFGPADRH PTAGTVAVGA 180
  181 RMPLVAYNVN LNTNDLSIAD AIAKKVRFLG GGLRFCKAMG VELTDRGIVQ VSMNLTDFTK 240
  241 TAVYRAHEMV RMEAARYGVS VVGSEVIGLV PMQALIDCAE YYLGIENFSM DQILESRIME 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	136.0
Match:	1tt9A
Description:	Structure of the bifunctional and Golgi associated formiminotransferase cyclodeaminase octamer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits