YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25284631
Organism:	Caulobacter vibrioides
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25284631.

Description	E-value	Query Range	Subject Range
gi\|113732109, gi... - gi\|167648792\|ref\|YP_001686455.1\| succinate dehydrogenase iron-sulfur subunit [Caulobacter sp. K31], ...	258.0	[0..1]	[260..1]
gi\|25284642, gi\|... - pir\|\|AI2900 succinate dehydrogenase iron-sulfur sdhB [imported] - Agrobacterium tumefaciens (strain ... gi\|15889898, gi\|... - gi\|17936517\|ref\|NP_533307.1\| succinate dehydrogenase catalytic subunit [Agrobacterium tumefaciens st...	251.0	[0..1]	[260..1]
gi\|78517462, gi\|... - gi\|78694346\|ref\|ZP_00858859.1\| Succinate dehydrogenase/fumarate reductase iron-sulfur protein [Brady...	250.0	[0..1]	[260..1]
gi\|94423595, gi\|... - gi\|94496919\|ref\|ZP_01303493.1\| succinate dehydrogenase iron-sulfur protein [Sphingomonas sp. SKA58],...	249.0	[0..1]	[258..1]
gi\|14024355, gi\|... - gi\|14024355\|dbj\|BAB50959.1\| succinate dehydrogenase iron-sulfur protein subunit [Mesorhizobium loti ...	249.0	[0..1]	[260..1]
gi\|69141816, gi\|... - gi\|92119078\|ref\|YP_578807.1\| succinate dehydrogenase iron-sulfur subunit [Nitrobacter hamburgensis X...	249.0	[0..1]	[260..1]
gi\|86283577, gi\|... - gi\|86359475\|ref\|YP_471367.1\| succinate dehydrogenase iron-sulfur subunit [Rhizobium etli CFN 42], gi...	248.0	[0..1]	[260..1]
gi\|17982042, gi\|... - gi\|17986446\|ref\|NP_539080.1\| succinate dehydrogenase iron-sulfur subunit [Brucella melitensis 16M], ... gi\|189024970, gi... - gi\|189024970\|ref\|YP_001935738.1\| succinate dehydrogenase catalytic subunit [Brucella abortus S19], g... gi\|225853338, gi... - gi\|225853338\|ref\|YP_002733571.1\| succinate dehydrogenase and fumarate reductase iron-sulfur protein ... gi\|163843924, gi... - gi\|163843924\|ref\|YP_001628328.1\| succinate dehydrogenase iron-sulfur subunit [Brucella suis ATCC 234... gi\|254694534 - gi\|254694534\|ref\|ZP_05156362.1\| succinate dehydrogenase iron-sulfur subunit [Brucella abortus bv. 3 ... gi\|25284643 - pir\|\|AE3272 succinate dehydrogenase (EC 1.3.99.1) [imported] - Brucella melitensis (strain 16M) gi\|237788330, gi... - gi\|237816263\|ref\|ZP_04595256.1\| succinate dehydrogenase and fumarate reductase iron-sulfur protein [... gi\|254707571 - gi\|254707571\|ref\|ZP_05169399.1\| succinate dehydrogenase iron-sulfur subunit [Brucella pinnipedialis ... gi\|254696159 - gi\|254696159\|ref\|ZP_05157987.1\| succinate dehydrogenase iron-sulfur subunit [Brucella abortus bv. 2 ... gi\|254713683 - gi\|254713683\|ref\|ZP_05175494.1\| succinate dehydrogenase iron-sulfur subunit [Brucella ceti M644/93/1... gi\|254708892 - gi\|254708892\|ref\|ZP_05170703.1\| succinate dehydrogenase iron-sulfur subunit [Brucella pinnipedialis ... gi\|254731077 - gi\|254731077\|ref\|ZP_05189655.1\| succinate dehydrogenase iron-sulfur subunit [Brucella abortus bv. 4 ... gi\|254715966 - gi\|254715966\|ref\|ZP_05177777.1\| succinate dehydrogenase iron-sulfur subunit [Brucella ceti M13/05/1] gi\|82616769 - gi\|82616769\|emb\|CAJ11856.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain:Succinate dehydrogenase/fu... gi\|148560298, gi... - gi\|148560298\|ref\|YP_001259725.1\| succinate dehydrogenase iron-sulfur subunit [Brucella ovis ATCC 258... gi\|82700668 - gi\|82700668\|ref\|YP_415242.1\| succinate dehydrogenase iron-sulfur subunit [Brucella melitensis biovar... gi\|62290757, gi\|... - gi\|62290757\|ref\|YP_222550.1\| succinate dehydrogenase iron-sulfur subunit [Brucella abortus bv. 1 str...	248.0	[0..1]	[260..1]
gi\|3169725 - gi\|3169725\|gb\|AAC17943.1\| succinate dehydrogenase iron-sulfur protein subunit [Bradyrhizobium japoni... gi\|27348763, gi\|... - gi\|27375626\|ref\|NP_767155.1\| succinate dehydrogenase iron-sulfur subunit [Bradyrhizobium japonicum U...	248.0	[0..1]	[260..1]
gi\|99035644, gi\|... - gi\|99078506\|ref\|YP_611764.1\| succinate dehydrogenase iron-sulfur subunit [Silicibacter sp. TM1040], ...	248.0	[0..1]	[260..1]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVELALPKNS QVKSGKHWPA PAGAKKVKTF KIYRYDPESG GNPRWDTYDV DVDAVGPMVL  60
   61 DALLYIKNTI DPTLAFRRSC REGVCGSCSM NIGGRNTLAC THGWAEVPGK AVQISPLPHM 120
  121 PVVKDLIPDL TLFYAQYASI EPWLHTDTPE PQTEWKQSPE DREKLDGLYE CILCACCSTS 180
  181 CPSYWWNGDK YLGPAALLHA YRWLIDSRDE ATGDRLDALE DPFKLYRCHT IMNCAQVCPK 240
  241 GLNPAKAIAE IKKMMVERVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.221849
Match:	1yq3B
Description:	Avian respiratory complex ii with oxaloacetate and ubiquinone
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits