YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25399411
Organism:	Caulobacter vibrioides
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25399411.

Description	E-value	Query Range	Subject Range
gi\|62196881, gi\|... - gi\|62290749\|ref\|YP_222542.1\| hypothetical protein BruAb1_1869 [Brucella abortus bv. 1 str. 9-941], g... gi\|82700660 - gi\|82700660\|ref\|YP_415234.1\| SAM-binding motif-containing protein [Brucella melitensis biovar Abortu... gi\|254696151 - gi\|254696151\|ref\|ZP_05157979.1\| SAM (and some other nucleotide) binding motif [Brucella abortus bv. ... gi\|82616761 - gi\|82616761\|emb\|CAJ11848.1\| SAM (and some other nucleotide) binding motif [Brucella melitensis biova... gi\|254731069 - gi\|254731069\|ref\|ZP_05189647.1\| SAM (and some other nucleotide) binding motif [Brucella abortus bv. ... gi\|189024962, gi... - gi\|189024962\|ref\|YP_001935730.1\| SAM (and some other nucleotide) binding motif [Brucella abortus S19... gi\|237816255, gi... - gi\|237816255\|ref\|ZP_04595248.1\| Hypothetical protein, conserved [Brucella abortus str. 2308 A], gi\|2...	126.0	[0..1]	[216..1]
gi\|254700536 - gi\|254700536\|ref\|ZP_05162364.1\| hypothetical protein Bsuib55_06741 [Brucella suis bv. 5 str. 513] gi\|254704907 - gi\|254704907\|ref\|ZP_05166735.1\| hypothetical protein Bsuib36_13510 [Brucella suis bv. 3 str. 686] gi\|23502744, gi\|... - gi\|23502744\|ref\|NP_698871.1\| hypothetical protein BR1892 [Brucella suis 1330], gi\|23348761\|gb\|AAN307... gi\|225628093, gi... - gi\|225628093\|ref\|ZP_03786128.1\| Hypothetical protein, conserved [Brucella ceti str. Cudo], gi\|225616... gi\|254715958 - gi\|254715958\|ref\|ZP_05177769.1\| hypothetical protein BcetM_05907 [Brucella ceti M13/05/1] gi\|254708885 - gi\|254708885\|ref\|ZP_05170696.1\| hypothetical protein BpinB_01213 [Brucella pinnipedialis B2/94] gi\|254713691 - gi\|254713691\|ref\|ZP_05175502.1\| hypothetical protein BcetM6_10110 [Brucella ceti M644/93/1]	125.0	[0..1]	[216..1]
gi\|17982052, gi\|... - gi\|17986455\|ref\|NP_539089.1\| ribosomal protein L11 methyltransferase [Brucella melitensis 16M], gi\|1... gi\|25526885 - pir\|\|AF3273 ribosomal protein L11 methyltransferase (EC 2.1.1.-) [imported] - Brucella melitensis (s...	123.0	[0..1]	[216..1]
gi\|167644335, gi... - gi\|167644335\|ref\|YP_001681998.1\| hypothetical protein Caul_0363 [Caulobacter sp. K31], gi\|167346765\|...	123.0	[0..1]	[219..5]
PEAM1_ARATH - Phosphoethanolamine N-methyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=1 SV=1	121.0	[0..56]	[213..259]
gi\|45272584 - gi\|45272584\|gb\|AAS57723.1\| phosphoethanolamine N-methyltransferase [Oryza sativa]	120.0	[0..56]	[213..268]
gi\|34911440, gi\|... - gi\|34911440\|ref\|NP_917067.1\| putative phosphoethanolamine methyltransferase [Oryza sativa (japonica ...	120.0	[0..56]	[213..268]
gi\|83309871, gi\|... - gi\|83309871\|ref\|YP_420135.1\| methyltransferase [Magnetospirillum magneticum AMB-1], gi\|82944712\|dbj\|...	119.0	[0..5]	[218..7]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVQTLEGRR AFIRDNTQLL PPPHAPELAL HLADEVTPLW KLTEEALEEI GLPPPFWAFA  60
   61 WAGGQALARY ILDHPETVAG KTVFDFATGS GLVAIAAMKA GAKSVLANDI DVFCEAAVTL 120
  121 NAEANGVLVA FTEANLLGGP PPEAQVLLAG DICYEKPMAE AVMDWLRRGR AQGSTVLIGD 180
  181 PGRTYFRKDD LVKLAEYQVE TTRELEDMAV KRTSVWTLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1uwvA
Description:	Crystal Structure of RumA, the iron-sulfur cluster containing E. coli 23S Ribosomal RNA 5-Methyluridine Methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.723277178398499	bayes_pls_golite062009
transferase activity	0.64512166557639	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.54403439349476	bayes_pls_golite062009
methyltransferase activity	0.54389223881989	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: