YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|13424990, gi\|...
Organism:	Caulobacter crescentus CB15
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13424990, gi|....

Description	E-value	Query Range	Subject Range
gi\|21593282 - gi\|21593282\|gb\|AAM65231.1\| unknown [Arabidopsis thaliana]	179.0	[0..2]	[221..68]
gi\|109128651 - gi\|109128651\|ref\|XP_001099128.1\| PREDICTED: similar to CG30493-PB isoform 2 [Macaca mulatta]	169.0	[0..22]	[203..99]
CG30493-PB - This gene is referred to in FlyBase by the symbol Dmel\CG30493 (CG30493, FBgn0050493). It is a prote...	167.0	[0..8]	[215..94]
gi\|73949782 - gi\|73949782\|ref\|XP_862633.1\| PREDICTED: similar to CG30493-PB isoform 2 [Canis familiaris]	166.0	[0..10]	[203..77]
gi\|51259441, gi\|... - gi\|75775127\|gb\|AAI04703.1\| Coq9 protein [Rattus norvegicus], gi\|51259441\|gb\|AAH79370.1\| Coq9 protein...	165.0	[0..22]	[203..90]
COQ9_MOUSE - Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Mus musculus GN=Coq9 PE=1 SV=1	165.0	[0..22]	[203..93]

Back

Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETVDTSGQ ASDQAGANWA DQAEQRVLDE ALRLAPKAGW NNGLVSRALS AAGLSEAEGQ  60
   61 LLLPEGARDL AALLSRRHDA AALARLQAFD VAALKIRQRI REGVVARLDA AQENADVLRP 120
  121 LAAFLAFPTN LALALRLTWE SADAIWRWAG DTATDENHYS KRAILSGILI STLAVDMASG 180
  181 RASALSHLDA RIDNVMAFEK WKAGLKPMDL ASEMVSALAR MRFGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	2oflA
Description:	No description for 2oflA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits