YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|16127352, gi|...
Organism: Caulobacter crescentus CB15
Length: 404 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16127352, gi|....

Description E-value Query
Range
Subject
Range
gi|111019375, gi... - gi|111019375|ref|YP_702347.1| benzoate 1,2-dioxygenase alpha subunit [Rhodococcus jostii RHA1], gi|1...
gi|194277420 - gi|194277420|gb|ACF39373.1| benzoate 1,2-dioxygenase large subunit [Rhodococcus sp. DK17]
248.0 [0..17] [376..12]

Back

Predicted Domain #1
Region A:
Residues: [1-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGASQPYDL GPGIRRGSRG KGGAMTQIPN HDPLSDWGLP GWIYTSERFF KEEQDKVFRP  60
   61 SWQIVCHLND IPKAGDFHTF DFIGESLVVV RSKDGGVRAF ANVCRHRGAR LLDGPVGRCG 120
  121 GRIVCPYHAW TYDLEGRLIG VPMRDDYPAL DMAKEGLATI EVEVWRGFVF VRLEGDGPSV 180
  181 ATMMAPYEDE VAHYRFEELQ PFGRVTLRPR AVNWKNISDN YSDGLHIPVA HPGLTRLFGK 240
  241 GYGVEAEAYV DKMWGQLIDE PSESPSERLY QDILPDVAHL PGDRKRLWTY FKLWPNFAFD 300
  301 IYPDQVDFMQ FIPISAEQTM IREIAYALPD DRREMKAARY LNWRINRQVN TEDTELVARV 360
  361 QQGMASRTFT AGPLATSEVS LRSFGRKMRA LIPESRMPRP PEGW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.69897
Match: 1uliA
Description: Biphenyl dioxygenase (BphA1A2) derived from Rhodococcus sp. strain RHA1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle