YRC Public Data Repository - Protein Structure Prediction

Protein:	RF2_CAUCR
Organism:	Caulobacter crescentus CB15
Length:	371 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RF2_CAUCR.

Description	E-value	Query Range	Subject Range
RF2_ECOLU - Peptide chain release factor 2 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=prfB PE=3 ... RF2_ECO57 - Peptide chain release factor 2 OS=Escherichia coli O157:H7 GN=prfB PE=3 SV=1 RF2_ECO45 - Peptide chain release factor 2 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=prfB PE=3 SV=1 RF2_ECO81 - Peptide chain release factor 2 OS=Escherichia coli O81 (strain ED1a) GN=prfB PE=3 SV=1 RF2_ECO55 - Peptide chain release factor 2 OS=Escherichia coli (strain 55989 / EAEC) GN=prfB PE=3 SV=1 RF2_ECO7I - Peptide chain release factor 2 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=prfB PE=3 SV=1 RF2_ECOLC - Peptide chain release factor 2 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=prfB PE... RF2_ECOSM - Peptide chain release factor 2 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=prfB PE=3 SV=1 RF2_ECO27 - Peptide chain release factor 2 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=prfB PE=3 SV=... RF2_ESCF3 - Peptide chain release factor 2 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-7... RF2_SHIFL - Peptide chain release factor 2 OS=Shigella flexneri GN=prfB PE=3 SV=1 gi\|253978870, gi... - gi\|254289563\|ref\|YP_003055311.1\| peptide chain release factor 2 [Escherichia coli BL21(DE3)], gi\|253... RF2_ECOL6 - Peptide chain release factor 2 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=prf... gi\|30064203, gi\|... - gi\|30064203\|ref\|NP_838374.1\| peptide chain release factor 2 [Shigella flexneri 2a str. 2457T], gi\|30... gi\|13363235, gi\|... - gi\|15833017\|ref\|NP_311790.1\| peptide chain release factor 2 [Escherichia coli O157:H7 str. Sakai], g... gi\|254162803, gi... - gi\|254162803\|ref\|YP_003045911.1\| peptide chain release factor 2 [Escherichia coli B str. REL606], gi... gi\|25299661 - pir\|\|C91099 peptide chain release factor RF-2 [imported] - Escherichia coli (strain O157:H7, substra... RF2_ECOL6 - Peptide chain release factor 2 OS=Escherichia coli O6 GN=prfB PE=3 SV=1 sp\|B7UHU0\|RF2_ECO27 - Peptide chain release factor 2 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=prfB PE=3 SV=...	453.0	[0..4]	[361..9]

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Predicted Domain #1

Region A:
Residues: [1-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRPLRPTSS SPWDCSGGVF DWDVALRKLD ELNARVEDPT LWDRPSEAQA VSRERANLAA  60
   61 KVEAVQSIER DLKDALEYAE LAEMESDEDS LNDARAQLKS LKERAGRAEL EALLSGEADG 120
  121 NDCYVEINSG AGGTESCDWA GILLRMYTRW ANAHGMTTEL IEETDGDQAG IKSATLLVKG 180
  181 ANAYGWLKTE AGVHRLVRIS PYDSSARRHT SFASAWVYPV VDDNIEIEIN PSDVRTDTYR 240
  241 ASGAGGQHIN KTDSAVRLTH IPTGIAVACQ AGRSQHQNRE EAWKMLRARL YEAELQKREA 300
  301 AQQALEDQKT DIGWGHQIRS YVLQPYQMVK DLRTNVETSD TQGVLDGDLD AFMAASLAQR 360
  361 VGHTRDGGEA S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	128.0
Match:	1gqeA
Description:	Polypeptide chain release factor 2 (RF2)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits