YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25397302
Organism:	Caulobacter vibrioides
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25397302.

Description	E-value	Query Range	Subject Range
gi\|91777550, gi\|... - gi\|91777550\|ref\|YP_552758.1\| hypothetical protein Bxe_B2585 [Burkholderia xenovorans LB400], gi\|9169...	352.0	[0..6]	[263..10]
gi\|46315875, gi\|... - gi\|78060833\|ref\|YP_367408.1\| hypothetical protein Bcep18194_C7720 [Burkholderia sp. 383], gi\|7796538...	349.0	[0..2]	[264..12]
gi\|63256119, gi\|... - gi\|66045412\|ref\|YP_235253.1\| hypothetical protein Psyr_2172 [Pseudomonas syringae pv. syringae B728a...	346.0	[0..2]	[265..5]
gi\|11349021 - pir\|\|D83536 hypothetical protein PA0878 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|15596075, gi\|... - gi\|9946777\|gb\|AAG04267.1\|AE004522_9 hypothetical protein PA0878 [Pseudomonas aeruginosa PAO1], gi\|15... gi\|107100336 - gi\|107100336\|ref\|ZP_01364254.1\| hypothetical protein PaerPA_01001361 [Pseudomonas aeruginosa PACS2] gi\|126171162, gi... - gi\|84316648\|ref\|ZP_00965120.1\| COG3777: Uncharacterized conserved protein [Pseudomonas aeruginosa C3... gi\|254245165, gi... - gi\|84322687\|ref\|ZP_00970771.1\| COG3777: Uncharacterized conserved protein [Pseudomonas aeruginosa 21... gi\|218893153, gi... - gi\|218893153\|ref\|YP_002442022.1\| hypothetical protein PLES_44381 [Pseudomonas aeruginosa LESB58], gi...	343.0	[0..2]	[265..4]
gi\|94418020, gi\|... - gi\|94418020\|ref\|ZP_01297836.1\| hypothetical protein PaerP_01000169 [Pseudomonas aeruginosa PA7], gi\|...	343.0	[0..2]	[265..4]
gi\|134137228, gi... - gi\|67545946\|ref\|ZP_00423864.1\| conserved hypothetical protein [Burkholderia vietnamiensis G4], gi\|67...	342.0	[0..6]	[265..11]
gi\|32040890, gi\|... - gi\|32040890\|ref\|ZP_00138473.1\| COG3777: Uncharacterized conserved protein [Pseudomonas aeruginosa UC...	340.0	[0..2]	[265..4]
gi\|105897719, gi... - gi\|67656673\|ref\|ZP_00454055.1\| conserved hypothetical protein [Burkholderia cenocepacia AU 1054], gi... gi\|67102562, gi\|... - gi\|67663793\|ref\|ZP_00461072.1\| conserved hypothetical protein [Burkholderia cenocepacia HI2424], gi\|...	340.0	[0..2]	[264..12]
gi\|84352304 - gi\|84352304\|ref\|ZP_00977271.1\| COG3777: Uncharacterized conserved protein [Burkholderia cenocepacia ...	340.0	[0..2]	[263..12]
gi\|72120710, gi\|... - gi\|73537373\|ref\|YP_297740.1\| hypothetical protein Reut_B3538 [Ralstonia eutropha JMP134], gi\|7212071...	338.0	[0..7]	[264..13]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPHADWIGR TRKTTAVLEA SDLARLAALL NREAPAEVPP AWHWACLAEP VARADIGPDG  60
   61 HPRRGLFLPP IAATRRMFAS ADMSFSGALV AGQETDLVET IANIEEKPGA SGPLTFVTVD 120
  121 RVISQANELR VRERQTIVYT SASSAPRVAD SGPPPPAAWS QDTATDPVLL FAFSAATSNS 180
  181 HRIHYDLGYA TQVEGYPGLV VHGPLIALLL LDAMPPRAVS RFSFRALKPA FAGETLTAEG 240
  241 RLIEDGAELW AISGDATLMQ ARVTF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	7.57
Match:	2cdhS
Description:	No description for 2cdhS was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits